fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G25390.2 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt008236 not found in 178aa AT5G11190.1 1st_not 0.575129533 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G25390.2     MVHSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKT
pt008236_POPTR_ MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKT
                **:*********************************:***:*********:*****.***

AT5G25390.2     NFPVIKSNGSNSL--EINSALRSPKSLSELLNAKLRKNC-KDQTPYLTCLRLDNDSSHIG
pt008236_POPTR_ NFPTSHLDQDTNLGKDNNSPLPA-KALAELLNSKLRKCCGKDPSPSLTCLRLDNDNSHIG
                ***. : : ...*  : **.* : *:*:****:**** * ** :* *********.****

AT5G25390.2     VWQKRAGSKTSPNWVKLVELGD---KVNARPGGDIETNKMKVRNEDVQEDDQMAMQMIEE
pt008236_POPTR_ VWQKKAGSRSSSNWVMKVELGNYNKKTESSPTVEIEPEN------GTEEEDRIAMQMIEE
                ****:***::*.***  ****:   *.:: *  :**.::      ..:*:*::*******

AT5G25390.2     LLNWTCPGSGSIAQV
pt008236_POPTR_ LLNRN----------
                *** .
BoxShade v3.31 C (beta, 970507) Output
AT5G25390.2     M V H S K K F R G V R Q R Q W G S W V S E I R H P L L K R R V W L G T F D T A E T A A R A Y D Q A A V L M N G Q S A K T
pt008236_POPTR_    M V Q S K K F R G V R Q R Q W G S W V S E I R H P L L K R R V W L G T F E T A E A A A R A Y D Q A A I L M N G Q N A K T
 
AT5G25390.2     N F P V I K S N G S N S L - - E I N S A L R S P K S L S E L L N A K L R K N C - K D Q T P Y L T C L R L D N D S S H I G
pt008236_POPTR_    N F P T S H L D Q D T N L G K D N N S P L P A - K A L A E L L N S K L R K C C G K D P S P S L T C L R L D N D N S H I G
 
AT5G25390.2     V W Q K R A G S K T S P N W V K L V E L G D - - - K V N A R P G G D I E T N K M K V R N E D V Q E D D Q M A M Q M I E E
pt008236_POPTR_    V W Q K K A G S R S S S N W V M K V E L G N Y N K K T E S S P T V E I E P E N - - - - - - G T E E E D R I A M Q M I E E
 
AT5G25390.2     L L N W T C P G S G S I A Q V
pt008236_POPTR_    L L N R N - - - - - - - - - -
 
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