fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G25890.1 MEEEKRLELRLAPPCH at 5/175 in AT5G25890.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009342 ASEDKKLELRLGPPGE in 28/246 AT3G16500.1 1st_not 0.411764705 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G25890.1     ME----------------------EEKRLELRLAPPCH---QFTSNNNINGSKQK-----
pt009342_POPTR_ MEEYIQGFNMTSEKEEWHKSHKASEDKKLELRLGPPGEISLVYKTNPTTHGAKRVLEHTV
                **                      *:*:*****.** .    :.:* . :*:*:      

AT5G25890.1     ----------SSTKETSFLSNNRVEVAPVVGWPPVRSSRRNL----TAQLKEEMKKKESD
pt009342_POPTR_ GAKPSEGYWFTDTDEKQY--KNRAALAPVVGWPPIRSFRKNLAGSSTPKLVSESRNKPPK
                          :.*.*..:  :**. :********:** *:**    *.:* .* ::* ..

AT5G25890.1     E---------EKELYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLF------------
pt009342_POPTR_ EGSSLKPDSFRNDLFVKINMEGVPIGRKINLNAYDSYEKLSVAIDELFRGLLAETADPRN
                *         .::*:*************:**.**:.*::** *:*:**            

AT5G25890.1     --------SKKDSWDLNRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSH----
pt009342_POPTR_ DKKVKEANANAGSVSGSGEYTLVYEDNEGDRILVGDVPWHMFVSTAKRLRVLKSTEISTP
                        :: .* . . :*******.***::*******.*****.***:***::.    

AT5G25890.1     --AFSLSPRKHGKE
pt009342_POPTR_ QRAFTFKL------
                  **::.
BoxShade v3.31 C (beta, 970507) Output
AT5G25890.1     M E - - - - - - - - - - - - - - - - - - - - - - E E K R L E L R L A P P C H - - - Q F T S N N N I N G S K Q K - - - - -
pt009342_POPTR_    M E E Y I Q G F N M T S E K E E W H K S H K A S E D K K L E L R L G P P G E I S L V Y K T N P T T H G A K R V L E H T V
 
AT5G25890.1     - - - - - - - - - - S S T K E T S F L S N N R V E V A P V V G W P P V R S S R R N L - - - - T A Q L K E E M K K K E S D
pt009342_POPTR_    G A K P S E G Y W F T D T D E K Q Y - - K N R A A L A P V V G W P P I R S F R K N L A G S S T P K L V S E S R N K P P K
 
AT5G25890.1     E - - - - - - - - - E K E L Y V K I N M E G V P I G R K V N L S A Y N N Y Q Q L S H A V D Q L F - - - - - - - - - - - -
pt009342_POPTR_    E G S S L K P D S F R N D L F V K I N M E G V P I G R K I N L N A Y D S Y E K L S V A I D E L F R G L L A E T A D P R N
 
AT5G25890.1     - - - - - - - - S K K D S W D L N R Q Y T L V Y E D T E G D K V L V G D V P W E M F V S T V K R L H V L K T S H - - - -
pt009342_POPTR_    D K K V K E A N A N A G S V S G S G E Y T L V Y E D N E G D R I L V G D V P W H M F V S T A K R L R V L K S T E I S T P
 
AT5G25890.1     - - A F S L S P R K H G K E
pt009342_POPTR_    Q R A F T F K L - - - - - -
 
0