fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G27910.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027792 not found in 248aa AT3G48590.1 1st_not 0.428125 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G27910.1     MENNNGNNQ----------------LPPKG---------------NEQLKSFWS---KEM
pt027792_POPTR_ MDNTTTNHQPQPTAYPTQSITTTPPLPPAGGAPSSTPFHHLLQQQQQQLQMFWSYQRQEI
                *:*.. *:*                *** *               ::**: ***   :*:

AT5G27910.1     EGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQESK
pt027792_POPTR_ EQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK
                *   *****:**::******* * ** **::*****::****:**::**:******:*.*

AT5G27910.1     RVTLQKSNVDAAVAQTVIFDFLLD----DDIEVKRES------VAAAAD--PVAMPPIDD
pt027792_POPTR_ RRTLQKNDIAAAITRTDIFDFLVDIVPRD--EIKEEAAGLGGIVGATASGVPYYYPPMGQ
                * ****.:: **:::* *****:*    *  *:*.*:      *.*:*.  *   **:.:

AT5G27910.1     -GELPPGMVIGTPVC-CSLGIHQPQPQMQAWPGAWTSVSGEEEE-----ARGKKGGDDGN
pt027792_POPTR_ PAAATGGMMIGRPAMDPATGVYV-QPPSQAWQSVWQTAATEDGSYGSGGASGGQGNLDGQ
                 .  . **:** *.   : *::  **  *** ..* :.: *: .     * * :*. **:

AT5G27910.1     -----------
pt027792_POPTR_ DYSKWTLPQLK
BoxShade v3.31 C (beta, 970507) Output
AT5G27910.1     M E N N N G N N Q - - - - - - - - - - - - - - - - L P P K G - - - - - - - - - - - - - - - N E Q L K S F W S - - - K E M
pt027792_POPTR_    M D N T T T N H Q P Q P T A Y P T Q S I T T T P P L P P A G G A P S S T P F H H L L Q Q Q Q Q Q L Q M F W S Y Q R Q E I
 
AT5G27910.1     E G N L D F K N H D L P I T R I K K I M K Y D P D V T M I A S E A P I L L S K A C E M F I M D L T M R S W L H A Q E S K
pt027792_POPTR_    E Q V N D F K N H Q L P L A R I K K I M K A D E D V R M I S A E A P I L F A K A C E L F I L E L T I R S W L H A E E N K
 
AT5G27910.1     R V T L Q K S N V D A A V A Q T V I F D F L L D - - - - D D I E V K R E S - - - - - - V A A A A D - - P V A M P P I D D
pt027792_POPTR_    R R T L Q K N D I A A A I T R T D I F D F L V D I V P R D - - E I K E E A A G L G G I V G A T A S G V P Y Y Y P P M G Q
 
AT5G27910.1     - G E L P P G M V I G T P V C - C S L G I H Q P Q P Q M Q A W P G A W T S V S G E E E E - - - - - A R G K K G G D D G N
pt027792_POPTR_    P A A A T G G M M I G R P A M D P A T G V Y V - Q P P S Q A W Q S V W Q T A A T E D G S Y G S G G A S G G Q G N L D G Q
 
AT5G27910.1     - - - - - - - - - - -
pt027792_POPTR_    D Y S K W T L P Q L K
 
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