fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G27910.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm015491 not found in 229aa AT3G48590.1 1st_not 0.4375 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G27910.1     MENNNGNNQ-------------------------LPP-------KGNEQLKSFWS---KE
gm015491_Glyma0 METNNQQQQQQGAQAQSGPYPVAGAGGSAGAGAGAPPPFQHLLQQQQQQLQMFWSYQRQE
                **.** ::*                          **       : ::**: ***   :*

AT5G27910.1     MEGNLDFKNHDLPITRIKKIMKYDPDVTMIASEAPILLSKACEMFIMDLTMRSWLHAQES
gm015491_Glyma0 IEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEEN
                :*   *****:**::******* * ** **::*****::****:**::**:******:*.

AT5G27910.1     KRVTLQKSNVDAAVAQTVIFDFLLD----DDIEVKRESVAAAAD--PVAMPPIDDGELPP
gm015491_Glyma0 KRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDDAALVGATASGVPYYYPPIGQ---PA
                ** ****.:: **:::* *****:*    *:*: .   *.*:*.  *   ***.:   *.

AT5G27910.1     GMVIGTP-VCCSLGIHQPQPQMQAWPGAWTSVSGEEEEARGKKGGD---DGN-
gm015491_Glyma0 GMMIGRPAVDPATGVYV-QPPSQAWQSVWQSAAEDASYGTGGAGAQRSLDGQS
                **:** * *  : *::  **  *** ..* *.: : . . *  *.:   **:
BoxShade v3.31 C (beta, 970507) Output
AT5G27910.1     M E N N N G N N Q - - - - - - - - - - - - - - - - - - - - - - - - - L P P - - - - - - - K G N E Q L K S F W S - - - K E
gm015491_Glyma0    M E T N N Q Q Q Q Q Q G A Q A Q S G P Y P V A G A G G S A G A G A G A P P P F Q H L L Q Q Q Q Q Q L Q M F W S Y Q R Q E
 
AT5G27910.1     M E G N L D F K N H D L P I T R I K K I M K Y D P D V T M I A S E A P I L L S K A C E M F I M D L T M R S W L H A Q E S
gm015491_Glyma0    I E H V N D F K N H Q L P L A R I K K I M K A D E D V R M I S A E A P I L F A K A C E L F I L E L T I R S W L H A E E N
 
AT5G27910.1     K R V T L Q K S N V D A A V A Q T V I F D F L L D - - - - D D I E V K R E S V A A A A D - - P V A M P P I D D G E L P P
gm015491_Glyma0    K R R T L Q K N D I A A A I T R T D I F D F L V D I V P R D E I K D D A A L V G A T A S G V P Y Y Y P P I G Q - - - P A
 
AT5G27910.1     G M V I G T P - V C C S L G I H Q P Q P Q M Q A W P G A W T S V S G E E E E A R G K K G G D - - - D G N -
gm015491_Glyma0    G M M I G R P A V D P A T G V Y V - Q P P S Q A W Q S V W Q S A A E D A S Y G T G G A G A Q R S L D G Q S
 
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