fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G38800.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003451 not found in 193aa AT3G30530.1 1st_not 0.440476190 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G38800.1     MQPSTNIFSLHGCPPSYLSHIPTSSPFC-GQNPNPFFSFETGVNTSQFMSLIS-------
pt003451_POPTR_ MQPS-EVTGLHYLVPS--SPSPYSANFSMSQNDSQMFQFTNPSYNSQIPSQVQEFSLQAS
                **** :: .**   **  *  * *: *. .** . :*.* .   .**: * :.       

AT5G38800.1     --SNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENH
pt003451_POPTR_ CMSSISTSDEADEQQLSLINERKQRRMVSNRESARRSRMRKQKHLDELWSQVVWFRNENH
                  *. ******:*:: .:******:* :**************:::*******:*:*:***

AT5G38800.1     QLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQNQSPFSCIRDDDDVV-----
pt003451_POPTR_ QLLDKLNHVSECHDRVVHENAQLKEETSGLRQILTDMQL--NSPYPLLKDLEDITCDTAY
                *** *** * *.:::*:.**.******: *:*:::****  :**:. ::* :*:.     

AT5G38800.1     ------------------
pt003451_POPTR_ LGSESSNQSITSSSDLLG
BoxShade v3.31 C (beta, 970507) Output
AT5G38800.1     M Q P S T N I F S L H G C P P S Y L S H I P T S S P F C - G Q N P N P F F S F E T G V N T S Q F M S L I S - - - - - - -
pt003451_POPTR_    M Q P S - E V T G L H Y L V P S - - S P S P Y S A N F S M S Q N D S Q M F Q F T N P S Y N S Q I P S Q V Q E F S L Q A S
 
AT5G38800.1     - - S N N S T S D E A E E N H K E I I N E R K Q K R K I S N R E S A R R S R M R K Q R Q V D E L W S Q V M W L R D E N H
pt003451_POPTR_    C M S S I S T S D E A D E Q Q L S L I N E R K Q R R M V S N R E S A R R S R M R K Q K H L D E L W S Q V V W F R N E N H
 
AT5G38800.1     Q L L R K L N C V L E S Q E K V I E E N V Q L K E E T T E L K Q M I S D M Q L Q N Q S P F S C I R D D D D V V - - - - -
pt003451_POPTR_    Q L L D K L N H V S E C H D R V V H E N A Q L K E E T S G L R Q I L T D M Q L - - N S P Y P L L K D L E D I T C D T A Y
 
AT5G38800.1     - - - - - - - - - - - - - - - - - -
pt003451_POPTR_    L G S E S S N Q S I T S S S D L L G
 
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