fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G38800.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003451 not found in 193aa AT3G30530.1 1st_not 0.440476190 II
Pt019238 not found in 196aa AT3G30530.1 not_not 0.416666666 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G38800.1     MQPSTNIFSLHGCPPSYLSHIPTSSPFCG-----QNPNPFFSFETGVNTS---------Q
pt019238_POPTR_ MQPN-EIAGLHYLVP------PNSSPYSAHFSMTQDNSQMFQFNQFTNQSYNFQIPPQLQ
pt003451_POPTR_ MQPS-EVTGLHYLVP------SSPSPYSANFSMSQNDSQMF---QFTNPSYNSQIPSQVQ
                ***. :: .**   *      ...**:..     *: . :*     .* *         *

AT5G38800.1     FMSLIS---SNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVM
pt019238_POPTR_ EFSLQASCMSSHSTSDEADEQQLSLINERKQRRMISNRESARRSRMRKQKHLDELWSQVV
pt003451_POPTR_ EFSLQASCMSSISTSDEADEQQLSLINERKQRRMVSNRESARRSRMRKQKHLDELWSQVV
                 :** :   *. ******:*:: .:******:* :**************:::*******:

AT5G38800.1     WLRDENHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQNQSPFSCIRDDDD
pt019238_POPTR_ WLRNENHQLVDKVNHVSECHDQVVQENNQLKEEISELRQVLTDMQL--SSPYPSLKGLED
pt003451_POPTR_ WFRNENHQLLDKLNHVSECHDRVVHENAQLKEETSGLRQILTDMQL--NSPYPLLKDLED
                *:*:*****: *:* * *.:::*:.** ***** : *:*:::****  .**:. ::. :*

AT5G38800.1     VV-----------------------
pt019238_POPTR_ ITCDTAYLRAESSNQSITSSSDLLG
pt003451_POPTR_ ITCDTAYLGSESSNQSITSSSDLLG
                :.
BoxShade v3.31 C (beta, 970507) Output
AT5G38800.1     M Q P S T N I F S L H G C P P S Y L S H I P T S S P F C G - - - - - Q N P N P F F S F E T G V N T S - - - - - - - - - Q
pt019238_POPTR_    M Q P N - E I A G L H Y L V P - - - - - - P N S S P Y S A H F S M T Q D N S Q M F Q F N Q F T N Q S Y N F Q I P P Q L Q
pt003451_POPTR_    M Q P S - E V T G L H Y L V P - - - - - - S S P S P Y S A N F S M S Q N D S Q M F - - - Q F T N P S Y N S Q I P S Q V Q
 
AT5G38800.1     F M S L I S - - - S N N S T S D E A E E N H K E I I N E R K Q K R K I S N R E S A R R S R M R K Q R Q V D E L W S Q V M
pt019238_POPTR_    E F S L Q A S C M S S H S T S D E A D E Q Q L S L I N E R K Q R R M I S N R E S A R R S R M R K Q K H L D E L W S Q V V
pt003451_POPTR_    E F S L Q A S C M S S I S T S D E A D E Q Q L S L I N E R K Q R R M V S N R E S A R R S R M R K Q K H L D E L W S Q V V
 
AT5G38800.1     W L R D E N H Q L L R K L N C V L E S Q E K V I E E N V Q L K E E T T E L K Q M I S D M Q L Q N Q S P F S C I R D D D D
pt019238_POPTR_    W L R N E N H Q L V D K V N H V S E C H D Q V V Q E N N Q L K E E I S E L R Q V L T D M Q L - - S S P Y P S L K G L E D
pt003451_POPTR_    W F R N E N H Q L L D K L N H V S E C H D R V V H E N A Q L K E E T S G L R Q I L T D M Q L - - N S P Y P L L K D L E D
 
AT5G38800.1     V V - - - - - - - - - - - - - - - - - - - - - - -
pt019238_POPTR_    I T C D T A Y L R A E S S N Q S I T S S S D L L G
pt003451_POPTR_    I T C D T A Y L G S E S S N Q S I T S S S D L L G
 
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