fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G38800.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm022507 not found in 193aa AT3G30530.1 1st_not 0.434523809 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G38800.1     MQ--------------PSTNIFSLHGCPPSYLSHIPTSSPFCG-QNPNPFFSFETGVNTS
gm022507_Glyma0 MQAREITGLNYLLPPDPCFNYSMVQNTIPTFQLH-KLSNQFYGLQKPPP----QVLADFS
                **              *. *   ::.  *::  *   *. * * *:* *    :. .: *

AT5G38800.1     QFMSLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWL
gm022507_Glyma0 PPQSSCISSNSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSQVVWL
                   *   *.*******:*:::.:*****::* ***************:::*******:**

AT5G38800.1     RDENHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQN---QSPFSCIRDDD
gm022507_Glyma0 RNENHQLMDKLNHVSESHDKVAQENVQLREEASELRQMICDMQLHSPYHPPPLSPI--DD
                *:*****: *** * **::** :*****:**::**:***.****:.    .*:* *  **

AT5G38800.1     DVV-----------------
gm022507_Glyma0 DVSPYVKSDSSITDSLDLLG
                **
BoxShade v3.31 C (beta, 970507) Output
AT5G38800.1     M Q - - - - - - - - - - - - - - P S T N I F S L H G C P P S Y L S H I P T S S P F C G - Q N P N P F F S F E T G V N T S
gm022507_Glyma0    M Q A R E I T G L N Y L L P P D P C F N Y S M V Q N T I P T F Q L H - K L S N Q F Y G L Q K P P P - - - - Q V L A D F S
 
AT5G38800.1     Q F M S L I S S N N S T S D E A E E N H K E I I N E R K Q K R K I S N R E S A R R S R M R K Q R Q V D E L W S Q V M W L
gm022507_Glyma0    P P Q S S C I S S N S T S D E A D E Q Q Q S L I N E R K H R R M I S N R E S A R R S R M R K Q K H L D E L W S Q V V W L
 
AT5G38800.1     R D E N H Q L L R K L N C V L E S Q E K V I E E N V Q L K E E T T E L K Q M I S D M Q L Q N - - - Q S P F S C I R D D D
gm022507_Glyma0    R N E N H Q L M D K L N H V S E S H D K V A Q E N V Q L R E E A S E L R Q M I C D M Q L H S P Y H P P P L S P I - - D D
 
AT5G38800.1     D V V - - - - - - - - - - - - - - - - -
gm022507_Glyma0    D V S P Y V K S D S S I T D S L D L L G
 
0