fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G38800.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm050542 not found in 195aa AT3G30530.1 not_not 0.434523809 III
Gm051143 not found in 220aa AT3G30530.1 not_not 0.422619047 III
Gm035172 not found in 214aa AT3G30530.1 not_not 0.413690476 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G38800.1     MQPSTNIFSLHGCPPSYLSHIPT-SSPFCG--QNPN-PFFSFET------GVNTSQ----
gm035172_Glyma1 MQTKEVVSSLSYLLPSNPCSYPP-SNNYTSMIQNSI-PTFQFQRFSNQIYGCNNSHNTTY
gm051143_Glyma1 MQSREVVSGLNYLLPSNPCPYPPNNNNYTTMFQNNINPTFQFQRFSNQIYGYNNINNTPY
gm050542_Glyma1 MQARE-ITGLNYLLPSDPCPYPG----HYSMVQNTI-PTFQLHKLSNQFYGLQNPPK---
                **.   : .*    **  .  *     .    **   * *.:.       * :.      

AT5G38800.1     ------FM----SLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVD
gm035172_Glyma1 -QVPD-FS-PQSSCISS-NSTSDEADDQNLSLINERKHRRMLSNRESARRSRMRKQKHLD
gm051143_Glyma1 HKVPDLFS-PQSSCISS-NSTSDEADEQNLSLINERKHRRMISNRESARRSRMRKQKHLD
gm050542_Glyma1 -VLAD-FSPPQSSCISS-NSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLD
                      *     * *** *******:::: .:*****::* :**************:::*

AT5G38800.1     ELWSQVMWLRDENHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQLQNQS---
gm035172_Glyma1 ELWSQVVWLRNENHQLIDKLNHVSETHDQVLQENSQLKEEASELRQMIRDMQIHSPCGGP
gm051143_Glyma1 ELWSQVVWLRNENHQLMDKLNHVSESHDQVMQENAQLKEQALELRQMIRDMQIHSPC--P
gm050542_Glyma1 ELWSQVVWLRNENHQLMDKLNHVSASQDKVVQENVQLREEASELRQMICDMQLHSPYHPP
                ******:***:*****: *** *  ::::*::** **:*:: **:*** ***::.     

AT5G38800.1     ------------------PFSCIRDDD-------------DVV-
gm035172_Glyma1 NSFITPLED--HDVDHV-PSAYLRSDDSSNQFNSCNNNM-DLLG
gm051143_Glyma1 SSFITPLEDHHHDVDHVIPSAYLRSDSSNQLSNSCNNNMDDLLG
gm050542_Glyma1 P--LSPIDD---DV-----SPYVKSDS------SITDSL-DLLG
                                    . ::.*.             *::
BoxShade v3.31 C (beta, 970507) Output
AT5G38800.1     M Q P S T N I F S L H G C P P S Y L S H I P T - S S P F C G - - Q N P N - P F F S F E T - - - - - - G V N T S Q - - - -
gm035172_Glyma1    M Q T K E V V S S L S Y L L P S N P C S Y P P - S N N Y T S M I Q N S I - P T F Q F Q R F S N Q I Y G C N N S H N T T Y
gm051143_Glyma1    M Q S R E V V S G L N Y L L P S N P C P Y P P N N N N Y T T M F Q N N I N P T F Q F Q R F S N Q I Y G Y N N I N N T P Y
gm050542_Glyma1    M Q A R E - I T G L N Y L L P S D P C P Y P G - - - - H Y S M V Q N T I - P T F Q L H K L S N Q F Y G L Q N P P K - - -
 
AT5G38800.1     - - - - - - F M - - - - S L I S S N N S T S D E A E E N H K E I I N E R K Q K R K I S N R E S A R R S R M R K Q R Q V D
gm035172_Glyma1    - Q V P D - F S - P Q S S C I S S - N S T S D E A D D Q N L S L I N E R K H R R M L S N R E S A R R S R M R K Q K H L D
gm051143_Glyma1    H K V P D L F S - P Q S S C I S S - N S T S D E A D E Q N L S L I N E R K H R R M I S N R E S A R R S R M R K Q K H L D
gm050542_Glyma1    - V L A D - F S P P Q S S C I S S - N S T S D E A D E Q Q Q S L I N E R K H R R M I S N R E S A R R S R M R K Q K H L D
 
AT5G38800.1     E L W S Q V M W L R D E N H Q L L R K L N C V L E S Q E K V I E E N V Q L K E E T T E L K Q M I S D M Q L Q N Q S - - -
gm035172_Glyma1    E L W S Q V V W L R N E N H Q L I D K L N H V S E T H D Q V L Q E N S Q L K E E A S E L R Q M I R D M Q I H S P C G G P
gm051143_Glyma1    E L W S Q V V W L R N E N H Q L M D K L N H V S E S H D Q V M Q E N A Q L K E Q A L E L R Q M I R D M Q I H S P C - - P
gm050542_Glyma1    E L W S Q V V W L R N E N H Q L M D K L N H V S A S Q D K V V Q E N V Q L R E E A S E L R Q M I C D M Q L H S P Y H P P
 
AT5G38800.1     - - - - - - - - - - - - - - - - - - P F S C I R D D D - - - - - - - - - - - - - D V V -
gm035172_Glyma1    N S F I T P L E D - - H D V D H V - P S A Y L R S D D S S N Q F N S C N N N M - D L L G
gm051143_Glyma1    S S F I T P L E D H H H D V D H V I P S A Y L R S D S S N Q L S N S C N N N M D D L L G
gm050542_Glyma1    P - - L S P I D D - - - D V - - - - - S P Y V K S D S - - - - - - S I T D S L - D L L G
 
0