fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G38800.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm022507 not found in 193aa AT3G30530.1 1st_not 0.434523809 II
Gm050542 not found in 195aa AT3G30530.1 not_not 0.434523809 III
Gm051143 not found in 220aa AT3G30530.1 not_not 0.422619047 III
Gm035172 not found in 214aa AT3G30530.1 not_not 0.413690476 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G38800.1     MQPSTNIFSLH------GC--PP---SYLSHIPTSSPFCGQNPN-PFFSFET------GV
gm050542_Glyma1 MQARE-ITGLNYLLPSDPCPYPG---HY-SMV--------QNTI-PTFQLHKLSNQFYGL
gm035172_Glyma1 MQTKEVVSSLSYLLPSNPCSYPP-SNNYTSMI--------QNSI-PTFQFQRFSNQIYGC
gm022507_Glyma0 MQARE-ITGLNYLLPPDPC---F---NY-SMV--------QNTI-PTFQLHKLSNQFYGL
gm051143_Glyma1 MQSREVVSGLNYLLPSNPCPYPPNNNNYTTMF--------QNNINPTFQFQRFSNQIYGY
                **.   : .*        *        * : .        **   * *.:.       * 

AT5G38800.1     NTSQ----------FM----SLISSNNSTSDEAEENHKEIINERKQKRKISNRESARRSR
gm050542_Glyma1 QN----PPKVLAD-FSPPQSSCISS-NSTSDEADEQQQSLINERKHRRMISNRESARRSR
gm035172_Glyma1 NNSHNTTY-QVPD-FS-PQSSCISS-NSTSDEADDQNLSLINERKHRRMLSNRESARRSR
gm022507_Glyma0 QK---PPPQVLAD-FSPPQSSCISS-NSTSDEADEQQQSLINERKHRRMISNRESARRSR
gm051143_Glyma1 NNINNTPYHKVPDLFS-PQSSCISS-NSTSDEADEQNLSLINERKHRRMISNRESARRSR
                :.            *     * *** *******:::: .:*****::* :**********

AT5G38800.1     MRKQRQVDELWSQVMWLRDENHQLLRKLNCVLESQEKVIEENVQLKEETTELKQMISDMQ
gm050542_Glyma1 MRKQKHLDELWSQVVWLRNENHQLMDKLNHVSASQDKVVQENVQLREEASELRQMICDMQ
gm035172_Glyma1 MRKQKHLDELWSQVVWLRNENHQLIDKLNHVSETHDQVLQENSQLKEEASELRQMIRDMQ
gm022507_Glyma0 MRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDKVAQENVQLREEASELRQMICDMQ
gm051143_Glyma1 MRKQKHLDELWSQVVWLRNENHQLMDKLNHVSESHDQVMQENAQLKEQALELRQMIRDMQ
                ****:::*******:***:*****: *** *  ::::* :** **:*:: **:*** ***

AT5G38800.1     LQNQS---------------------PFSCIRDDD-------------DVV-
gm050542_Glyma1 LHSPYHPPP--LSPIDD---DV-----SPYVKSDS------SITDSL-DLLG
gm035172_Glyma1 IHSPCGGPNSFITPLED--HDVDHV-PSAYLRSDDSSNQFNSCNNNM-DLLG
gm022507_Glyma0 LHSPYHPPP--LSPIDD---DV-----SPYVKSDS------SITDSL-DLLG
gm051143_Glyma1 IHSPC--PSSFITPLEDHHHDVDHVIPSAYLRSDSSNQLSNSCNNNMDDLLG
                ::.                         . ::.*.             *::
BoxShade v3.31 C (beta, 970507) Output
AT5G38800.1     M Q P S T N I F S L H - - - - - - G C - - P P - - - S Y L S H I P T S S P F C G Q N P N - P F F S F E T - - - - - - G V
gm050542_Glyma1    M Q A R E - I T G L N Y L L P S D P C P Y P G - - - H Y - S M V - - - - - - - - Q N T I - P T F Q L H K L S N Q F Y G L
gm035172_Glyma1    M Q T K E V V S S L S Y L L P S N P C S Y P P - S N N Y T S M I - - - - - - - - Q N S I - P T F Q F Q R F S N Q I Y G C
gm022507_Glyma0    M Q A R E - I T G L N Y L L P P D P C - - - F - - - N Y - S M V - - - - - - - - Q N T I - P T F Q L H K L S N Q F Y G L
gm051143_Glyma1    M Q S R E V V S G L N Y L L P S N P C P Y P P N N N N Y T T M F - - - - - - - - Q N N I N P T F Q F Q R F S N Q I Y G Y
 
AT5G38800.1     N T S Q - - - - - - - - - - F M - - - - S L I S S N N S T S D E A E E N H K E I I N E R K Q K R K I S N R E S A R R S R
gm050542_Glyma1    Q N - - - - P P K V L A D - F S P P Q S S C I S S - N S T S D E A D E Q Q Q S L I N E R K H R R M I S N R E S A R R S R
gm035172_Glyma1    N N S H N T T Y - Q V P D - F S - P Q S S C I S S - N S T S D E A D D Q N L S L I N E R K H R R M L S N R E S A R R S R
gm022507_Glyma0    Q K - - - P P P Q V L A D - F S P P Q S S C I S S - N S T S D E A D E Q Q Q S L I N E R K H R R M I S N R E S A R R S R
gm051143_Glyma1    N N I N N T P Y H K V P D L F S - P Q S S C I S S - N S T S D E A D E Q N L S L I N E R K H R R M I S N R E S A R R S R
 
AT5G38800.1     M R K Q R Q V D E L W S Q V M W L R D E N H Q L L R K L N C V L E S Q E K V I E E N V Q L K E E T T E L K Q M I S D M Q
gm050542_Glyma1    M R K Q K H L D E L W S Q V V W L R N E N H Q L M D K L N H V S A S Q D K V V Q E N V Q L R E E A S E L R Q M I C D M Q
gm035172_Glyma1    M R K Q K H L D E L W S Q V V W L R N E N H Q L I D K L N H V S E T H D Q V L Q E N S Q L K E E A S E L R Q M I R D M Q
gm022507_Glyma0    M R K Q K H L D E L W S Q V V W L R N E N H Q L M D K L N H V S E S H D K V A Q E N V Q L R E E A S E L R Q M I C D M Q
gm051143_Glyma1    M R K Q K H L D E L W S Q V V W L R N E N H Q L M D K L N H V S E S H D Q V M Q E N A Q L K E Q A L E L R Q M I R D M Q
 
AT5G38800.1     L Q N Q S - - - - - - - - - - - - - - - - - - - - - P F S C I R D D D - - - - - - - - - - - - - D V V -
gm050542_Glyma1    L H S P Y H P P P - - L S P I D D - - - D V - - - - - S P Y V K S D S - - - - - - S I T D S L - D L L G
gm035172_Glyma1    I H S P C G G P N S F I T P L E D - - H D V D H V - P S A Y L R S D D S S N Q F N S C N N N M - D L L G
gm022507_Glyma0    L H S P Y H P P P - - L S P I D D - - - D V - - - - - S P Y V K S D S - - - - - - S I T D S L - D L L G
gm051143_Glyma1    I H S P C - - P S S F I T P L E D H H H D V D H V I P S A Y L R S D S S N Q L S N S C N N N M D D L L G
 
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