fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39820.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004358 not found in 400aa AT1G26870.1 1st_not 0.473767885 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G39820.1     MVLVMDDEESNNVERYDDVVLPGFRFHPTDEELVSFYLKRKVLHKSLPFDLIKKVDIYKY
pt004358_POPTR_ ------MEEKNDVDKIDDVMLPGFRFHPTDEELVGFYLKRKIQQRSLPIELIKQVDIYKY
                       **.*:*:: ***:**************.******: ::***::***:******

AT5G39820.1     DPWDLP----TMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLDSTRCI
pt004358_POPTR_ DPWDLPKELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSDGTRCI
                ******    * ******************:*******.************** *.****

AT5G39820.1     GLKKSLVFYRGRAAKGVKTDWMMHEFRLPSLSDSHHSSYPNYNNKKQHLNNNNNSKELPS
pt004358_POPTR_ GLKKSLVFYRGRAAKGMKTDWMMHEFRLPSLAEP-----P---PPKKLLD-----KSLPP
                ****************:**************::.     *     *: *:     *.**.

AT5G39820.1     NDAWAICRIFKKTNAVSSQRSIPQSWVYPTIPDNNQ-------------QSHNNTATLLA
pt004358_POPTR_ NDAWAICRIFKKTNSM-AQRALSHSWVSPVLPETTASDFFAQGAHCTQFSSENMSCTTEI
                **************:: :**::.:*** *.:*:..              .*.* :.*   

AT5G39820.1     SSDVLSHISTRQNF------------IPS--PVNE-------------------------
pt004358_POPTR_ GSNF--HLGSNNDFQQASPAGLSVLDIPSYRPINPIVHTSYIFPVSNGDLPNNFLFSPLE
                .*:.  *:.:.::*            ***  *:*                          

AT5G39820.1     ---PASFTESAASYF-----------ASQMLGVTYNTARNN--------------GTGDA
pt004358_POPTR_ NSGPIKSTDDAPSMLLNPALMGEAGKASESTGYEGSQQQFNGFSINLLQEMQGDIGTGDE
                   * . *:.*.* :           **:  *   .  : *              **** 

AT5G39820.1     LFLRNNGTGDALVLSNNENNYFNNLTG-----GLTHEVPNVRSMVM---EETTGSEMSAT
pt004358_POPTR_ TGLRKNPS------SIQDNNLFGTIRSIGFPFSLPSNLPDAWKSNLPWDSPSCPSEMS-T
                  **:* :      * ::** *..: .     .*. ::*:. .  :   . :  **** *

AT5G39820.1     SYSTNN---
pt004358_POPTR_ TYSTNKCHT
                :****:
BoxShade v3.31 C (beta, 970507) Output
AT5G39820.1     M V L V M D D E E S N N V E R Y D D V V L P G F R F H P T D E E L V S F Y L K R K V L H K S L P F D L I K K V D I Y K Y
pt004358_POPTR_    - - - - - - M E E K N D V D K I D D V M L P G F R F H P T D E E L V G F Y L K R K I Q Q R S L P I E L I K Q V D I Y K Y
 
AT5G39820.1     D P W D L P - - - - T M G E K E W Y F Y C P R D R K Y R N S T R P N R V T G G G F W K A T G T D R P I Y S L D S T R C I
pt004358_POPTR_    D P W D L P K E L A T T G E K E W Y F Y C P R D R K Y R N S A R P N R V T G A G F W K A T G T D R P I Y S S D G T R C I
 
AT5G39820.1     G L K K S L V F Y R G R A A K G V K T D W M M H E F R L P S L S D S H H S S Y P N Y N N K K Q H L N N N N N S K E L P S
pt004358_POPTR_    G L K K S L V F Y R G R A A K G M K T D W M M H E F R L P S L A E P - - - - - P - - - P P K K L L D - - - - - K S L P P
 
AT5G39820.1     N D A W A I C R I F K K T N A V S S Q R S I P Q S W V Y P T I P D N N Q - - - - - - - - - - - - - Q S H N N T A T L L A
pt004358_POPTR_    N D A W A I C R I F K K T N S M - A Q R A L S H S W V S P V L P E T T A S D F F A Q G A H C T Q F S S E N M S C T T E I
 
AT5G39820.1     S S D V L S H I S T R Q N F - - - - - - - - - - - - I P S - - P V N E - - - - - - - - - - - - - - - - - - - - - - - - -
pt004358_POPTR_    G S N F - - H L G S N N D F Q Q A S P A G L S V L D I P S Y R P I N P I V H T S Y I F P V S N G D L P N N F L F S P L E
 
AT5G39820.1     - - - P A S F T E S A A S Y F - - - - - - - - - - - A S Q M L G V T Y N T A R N N - - - - - - - - - - - - - - G T G D A
pt004358_POPTR_    N S G P I K S T D D A P S M L L N P A L M G E A G K A S E S T G Y E G S Q Q Q F N G F S I N L L Q E M Q G D I G T G D E
 
AT5G39820.1     L F L R N N G T G D A L V L S N N E N N Y F N N L T G - - - - - G L T H E V P N V R S M V M - - - E E T T G S E M S A T
pt004358_POPTR_    T G L R K N P S - - - - - - S I Q D N N L F G T I R S I G F P F S L P S N L P D A W K S N L P W D S P S C P S E M S - T
 
AT5G39820.1     S Y S T N N - - -
pt004358_POPTR_    T Y S T N K C H T
 
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