fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39860.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os011454 not found in 92aa AT1G26945.1 1st_not 0.577142857 II
Sb002496 not found in 86aa AT3G28857.1 1st_not 0.548571428 II
Gm051002 not found in 91aa AT1G26945.1 1st_not 0.76 II
Pt019267 not found in 90aa AT5G39860.1 not_1st 0.754285714 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G39860.1     MSNRRSR-QSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNL
gm051002_Glyma1 MSSRRSR-QQSASTRISDDQIIDLVSKLRQLVPEI-RDRRSDKVSASKVLQETCNYIRSL
Os011454_Os03t0 MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEA-RLRSNDRVPSSRVLQETCNYIRSL
Sb002496_Sorbi1 MSSGRRG-------RISDDEINELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSL
pt019267_POPTR_ MSSRRSR-QSSVP-RITDDQIIHLVSKLRQLLPEI-RQRRSDKVSASKVLQETCNYIKNL
                **. *         **:*::: .*:***: ::**  : *  .: .:*::*:*** **:.*

AT5G39860.1     NREVDNLSERLSQLLESVDEDSPEAAVIRSLLM
gm051002_Glyma1 HREVDDLSERLSQLLATIDADSPEAAIIRSLIN
Os011454_Os03t0 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM
Sb002496_Sorbi1 HREVDDLSERLSGLMSTMDNDSPQAEIIRSLLR
pt019267_POPTR_ HREVDDLSERLSQLLATIDSDSPEAEIIRSLIM
                ::***:****** *: : * .*.:* :****:
BoxShade v3.31 C (beta, 970507) Output
AT5G39860.1     M S N R R S R - Q S S S A P R I S D N Q M I D L V S K L R Q I L P E I G Q R R R S D K A S A S K V L Q E T C N Y I R N L
gm051002_Glyma1    M S S R R S R - Q Q S A S T R I S D D Q I I D L V S K L R Q L V P E I - R D R R S D K V S A S K V L Q E T C N Y I R S L
Os011454_Os03t0    M S S R R S R S R Q S G S S R I T D E Q I S D L V S K L Q D L L P E A - R L R S N D R V P S S R V L Q E T C N Y I R S L
Sb002496_Sorbi1    M S S G R R G - - - - - - - R I S D D E I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K S L
pt019267_POPTR_    M S S R R S R - Q S S V P - R I T D D Q I I H L V S K L R Q L L P E I - R Q R R S D K V S A S K V L Q E T C N Y I K N L
 
AT5G39860.1     N R E V D N L S E R L S Q L L E S V D E D S P E A A V I R S L L M
gm051002_Glyma1    H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I N
Os011454_Os03t0    H Q E V D D L S E R L S E L L A T S D M S S A Q A A I I R S L L M
Sb002496_Sorbi1    H R E V D D L S E R L S G L M S T M D N D S P Q A E I I R S L L R
pt019267_POPTR_    H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M
 
0