fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39860.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004762 not found in 90aa AT5G39860.1 1st_1st 0.777142857 Ia
Pt019267 not found in 90aa AT5G39860.1 not_1st 0.754285714 II
Pt023817 not found in 91aa AT1G74500.1 not_not 0.628571428 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G39860.1     MSNR--RSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRN
pt004762_POPTR_ MSSR--RPRQ-SSVPRITDDQIIDLVSKLRQLLPEISQ-RRSDKVSASKVLQETCNYIRN
pt023817_POPTR_ MSSRRSRSRQ-SSSSRISDDQILDLVTKLQQLLPEIRN-RRSDKVSAAKILQETCNYIKS
pt019267_POPTR_ MSSR--RSRQ-SSVPRITDDQIIHLVSKLRQLLPEIRQ-RRSDKVSASKVLQETCNYIKN
                **.*  *.** ** .**:*:*::.**:**:*:**** : *****.**:*:********:.

AT5G39860.1     LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM-
pt004762_POPTR_ LHREVDDLSERLSQLLATIDADSPEAAIIRSLIM-
pt023817_POPTR_ LHREVGDLSERLSELLET--TDTAQAAIIRNLLMQ
pt019267_POPTR_ LHREVDDLSERLSQLLATIDSDSPEAEIIRSLIM-
                *:***.:******:** :   *:.:* :**.*:*
BoxShade v3.31 C (beta, 970507) Output
AT5G39860.1     M S N R - - R S R Q S S S A P R I S D N Q M I D L V S K L R Q I L P E I G Q R R R S D K A S A S K V L Q E T C N Y I R N
pt004762_POPTR_    M S S R - - R P R Q - S S V P R I T D D Q I I D L V S K L R Q L L P E I S Q - R R S D K V S A S K V L Q E T C N Y I R N
pt023817_POPTR_    M S S R R S R S R Q - S S S S R I S D D Q I L D L V T K L Q Q L L P E I R N - R R S D K V S A A K I L Q E T C N Y I K S
pt019267_POPTR_    M S S R - - R S R Q - S S V P R I T D D Q I I H L V S K L R Q L L P E I R Q - R R S D K V S A S K V L Q E T C N Y I K N
 
AT5G39860.1     L N R E V D N L S E R L S Q L L E S V D E D S P E A A V I R S L L M -
pt004762_POPTR_    L H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I M -
pt023817_POPTR_    L H R E V G D L S E R L S E L L E T - - T D T A Q A A I I R N L L M Q
pt019267_POPTR_    L H R E V D D L S E R L S Q L L A T I D S D S P E A E I I R S L I M -
 
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