fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39860.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os011454 not found in 92aa AT1G26945.1 1st_not 0.577142857 II
Os011458 not found in 91aa AT1G26945.1 not_not 0.525714285 III
Os009859 not found in 88aa AT1G26945.1 not_not 0.502857142 III
Os024206 not found in 87aa AT1G26945.1 not_not 0.497142857 III
Os035852 not found in 88aa AT1G26945.1 not_not 0.491428571 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G39860.1     MSNRRSR-QSSSAPRISDNQMIDLVSKLRQILPEIGQRRRS-DKASASKVLQETCNYIRN
Os024206_Os06t0 MSSRR-----SSRSSVSEEEINELISKLQSLLP-SSRRRGA-NQASTTKLLKETCSYIKS
Os035852_Os10t0 MSGRR------ASGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKS
Os009859_Os02t0 MSSRR-----SSRGSISEEEINELISKLQSLLP-NSRRRGS-SQASTTKLLKETCNYIKS
Os011454_Os03t0 MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPE-ARLRSN-DRVPSSRVLQETCNYIRS
Os011458_Os03t0 MSSRRG--GGGGGGRITDEEINELISKLQALLPESSRSRGA-SRSSASKLLKETCSYIKS
                **.**      .   :::::: :*:***: :**  .: *   .: .::::*:* *.**:.

AT5G39860.1     LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM-
Os024206_Os06t0 LHREVDDLSDRLSDLMAGMDHNSPGAEIIRSLLR-
Os035852_Os10t0 LHREVDDLSERLSELMATMDSNSPQADIIRSLLR-
Os009859_Os02t0 LHREVDDLSDRLSDLMATMDHNSPGAEIIRSILRS
Os011454_Os03t0 LHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM-
Os011458_Os03t0 LHREVDDLSDRLSELMSTMDNNSPQAEIIRSLLR-
                *::***:**:***:*:   * .*. * :***:*
BoxShade v3.31 C (beta, 970507) Output
AT5G39860.1     M S N R R S R - Q S S S A P R I S D N Q M I D L V S K L R Q I L P E I G Q R R R S - D K A S A S K V L Q E T C N Y I R N
Os024206_Os06t0    M S S R R - - - - - S S R S S V S E E E I N E L I S K L Q S L L P - S S R R R G A - N Q A S T T K L L K E T C S Y I K S
Os035852_Os10t0    M S G R R - - - - - - A S G R I T D D E I N E L I S K L Q S L L P E S S R R R G A T S R S P A T K L L K E M C S Y I K S
Os009859_Os02t0    M S S R R - - - - - S S R G S I S E E E I N E L I S K L Q S L L P - N S R R R G S - S Q A S T T K L L K E T C N Y I K S
Os011454_Os03t0    M S S R R S R S R Q S G S S R I T D E Q I S D L V S K L Q D L L P E - A R L R S N - D R V P S S R V L Q E T C N Y I R S
Os011458_Os03t0    M S S R R G - - G G G G G G R I T D E E I N E L I S K L Q A L L P E S S R S R G A - S R S S A S K L L K E T C S Y I K S
 
AT5G39860.1     L N R E V D N L S E R L S Q L L E S V D E D S P E A A V I R S L L M -
Os024206_Os06t0    L H R E V D D L S D R L S D L M A G M D H N S P G A E I I R S L L R -
Os035852_Os10t0    L H R E V D D L S E R L S E L M A T M D S N S P Q A D I I R S L L R -
Os009859_Os02t0    L H R E V D D L S D R L S D L M A T M D H N S P G A E I I R S I L R S
Os011454_Os03t0    L H Q E V D D L S E R L S E L L A T S D M S S A Q A A I I R S L L M -
Os011458_Os03t0    L H R E V D D L S D R L S E L M S T M D N N S P Q A E I I R S L L R -
 
0