fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39860.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb002496 not found in 86aa AT3G28857.1 1st_not 0.548571428 II
Sb022206 not found in 213aa AT1G26945.1 not_not 0.537142857 III
Sb003265 not found in 86aa AT1G26945.1 not_not 0.485714285 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G39860.1     ----------------------------------------MSNRRSRQSSS-APRISDNQ
Sb022206_Sorbi1 LPFHHLCISNLLASLLTSQFVSRSLAKLLSPISQTTTSTKMSSRRSRSRQSGSSRITEEQ
Sb002496_Sorbi1 ----------------------------------------MSSGR-RG------RISDDE
Sb003265_Sorbi1 ----------------------------------------MSSRRSRA------SVSEEE
                                                        **. * *        :::::

AT5G39860.1     MIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQLLESVDE
Sb022206_Sorbi1 ISDLVSKLQDLLP-EARLQSNARVPSARVLQETCNYIRSLHQEVDDLSERLSELLATSDM
Sb002496_Sorbi1 INELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSLHREVDDLSERLSGLMSTMDN
Sb003265_Sorbi1 INELISRLQTLLP-SARRRGGSEASTTKLLKETCSYIKSLHREVDDLSDRLSDLMATMDH
                : :*:*:*: :**  .: :   . .::::*:*** **:.*::***:**:*** *: : * 

AT5G39860.1     DSPEAAVIRSLLM
Sb022206_Sorbi1 SSAQAAVIRSLLM
Sb002496_Sorbi1 DSPQAEIIRSLLR
Sb003265_Sorbi1 NSPGAEIIRSLLR
                .*. * :*****
BoxShade v3.31 C (beta, 970507) Output
AT5G39860.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S N R R S R Q S S S - A P R I S D N Q
Sb022206_Sorbi1    L P F H H L C I S N L L A S L L T S Q F V S R S L A K L L S P I S Q T T T S T K M S S R R S R S R Q S G S S R I T E E Q
Sb002496_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S G R - R G - - - - - - R I S D D E
Sb003265_Sorbi1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M S S R R S R A - - - - - - S V S E E E
 
AT5G39860.1     M I D L V S K L R Q I L P E I G Q R R R S D K A S A S K V L Q E T C N Y I R N L N R E V D N L S E R L S Q L L E S V D E
Sb022206_Sorbi1    I S D L V S K L Q D L L P - E A R L Q S N A R V P S A R V L Q E T C N Y I R S L H Q E V D D L S E R L S E L L A T S D M
Sb002496_Sorbi1    I N E L I S K L Q A L L P E S S R R R N A S R S S A S K L L K E T C A Y I K S L H R E V D D L S E R L S G L M S T M D N
Sb003265_Sorbi1    I N E L I S R L Q T L L P - S A R R R G G S E A S T T K L L K E T C S Y I K S L H R E V D D L S D R L S D L M A T M D H
 
AT5G39860.1     D S P E A A V I R S L L M
Sb022206_Sorbi1    S S A Q A A V I R S L L M
Sb002496_Sorbi1    D S P Q A E I I R S L L R
Sb003265_Sorbi1    N S P G A E I I R S L L R
 
0