fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39860.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm051002 not found in 91aa AT1G26945.1 1st_not 0.76 II

Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G39860.1     MSNRRSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLN
gm051002_Glyma1 MSSRRSRQQSASTRISDDQIIDLVSKLRQLVPEI-RDRRSDKVSASKVLQETCNYIRSLH
                **.*****.*::.****:*:*********::*** : *****.**************.*:

AT5G39860.1     REVDNLSERLSQLLESVDEDSPEAAVIRSLLM
gm051002_Glyma1 REVDDLSERLSQLLATIDADSPEAAIIRSLIN
                ****:********* ::* ******:****: 


BoxShade v3.31 C (beta, 970507) Output
AT5G39860.1     M S N R R S R Q S S S A P R I S D N Q M I D L V S K L R Q I L P E I G Q R R R S D K A S A S K V L Q E T C N Y I R N L N
gm051002_Glyma1    M S S R R S R Q Q S A S T R I S D D Q I I D L V S K L R Q L V P E I - R D R R S D K V S A S K V L Q E T C N Y I R S L H
 
AT5G39860.1     R E V D N L S E R L S Q L L E S V D E D S P E A A V I R S L L M
gm051002_Glyma1    R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I N
 
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