fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G39860.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm035037 not found in 91aa AT1G26945.1 not_not 0.76 III
Gm025833 not found in 91aa AT1G26945.1 not_not 0.714285714 III
Gm050375 not found in 92aa AT1G26945.1 not_not 0.714285714 III
Gm002763 not found in 93aa AT1G26945.1 not_not 0.645714285 III
Gm022905 not found in 93aa AT1G26945.1 not_not 0.64 III
Gm000625 not found in 93aa AT1G26945.1 not_not 0.64 III
Gm049258 not found in 93aa AT1G26945.1 not_not 0.628571428 III
Gm010049 not found in 92aa AT1G74500.1 not_not 0.628571428 III
Gm015729 not found in 92aa AT1G74500.1 not_not 0.617142857 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G39860.1     MSNRRSR--QSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRN
gm050375_Glyma1 MSSRRSR--QHSGSTRISDDQIIELVSKLRQLVPEI-RNRRSDKVSASKVLQETCNYIRG
gm025833_Glyma0 MSSRRSR--QHSGSTRISDDQIIELVSKLRQLVPEI-RNRRSDKVSASKVLQETCNYIRS
gm035037_Glyma1 MSSRRSR--QQSASTRISDDQIIDLVSKLRQLVPEI-RDRRSDKVSASKVLQETCNYIRS
gm000625_Glyma0 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPEL-RARRSDKVSSAKVLQETCNYIKN
gm015729_Glyma0 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEI-RDRRSDKVSASKVLQETCNYIRS
gm002763_Glyma0 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPEL-RARRSDKVSAAKVLQETCNYIKN
gm022905_Glyma0 MSSRRSRSRQSGVSTEITDAQITDLISKLQQLIPEL-RARRSDKVSASKVLQETCNYIKS
gm049258_Glyma1 MSSRRSRSSQSDVSTEITDAQITDIISKLQQLIPEL-DARRSDKVSASKVLQETCNYIKS
gm010049_Glyma0 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEI-RDRRSDKVSASKVLQETCNYIRS
                **.****  * . : .*:* *: :::***:*::**:   *****.*::**********:.

AT5G39860.1     LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM-
gm050375_Glyma1 LHREVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ
gm025833_Glyma0 LHREVSDLSERLSQLLTTIDADSAEAGIIRSLLN-
gm035037_Glyma1 LHREVDDLSERLSQLLATIDADSPEAAIIRSLIN-
gm000625_Glyma0 LHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM-
gm015729_Glyma0 LHREVGDLSERLSELLDTTD--TAQAAIIRNLLMQ
gm002763_Glyma0 LHREVDDLSDRLSELLANTDSNSAQAAIIRSLLM-
gm022905_Glyma0 LHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLM-
gm049258_Glyma1 LHREVDDLSDRLSQLLATTDSNSAQAAIIRSLLL-
gm010049_Glyma0 LHREVDDLSERLSELLATTD--TAQAAIIRNLLMQ
                *:***.:**:***:** . *  :.:*.:**.*:
BoxShade v3.31 C (beta, 970507) Output
AT5G39860.1     M S N R R S R - - Q S S S A P R I S D N Q M I D L V S K L R Q I L P E I G Q R R R S D K A S A S K V L Q E T C N Y I R N
gm050375_Glyma1    M S S R R S R - - Q H S G S T R I S D D Q I I E L V S K L R Q L V P E I - R N R R S D K V S A S K V L Q E T C N Y I R G
gm025833_Glyma0    M S S R R S R - - Q H S G S T R I S D D Q I I E L V S K L R Q L V P E I - R N R R S D K V S A S K V L Q E T C N Y I R S
gm035037_Glyma1    M S S R R S R - - Q Q S A S T R I S D D Q I I D L V S K L R Q L V P E I - R D R R S D K V S A S K V L Q E T C N Y I R S
gm000625_Glyma0    M S S R R S R S R Q S G A S A E I T D A Q I T D L V S K L Q Q L I P E L - R A R R S D K V S S A K V L Q E T C N Y I K N
gm015729_Glyma0    M S S R R S R S R Q T S S S R N I T D D Q I N D L V S K L Q Q L L P E I - R D R R S D K V S A S K V L Q E T C N Y I R S
gm002763_Glyma0    M S S R R S R S R Q S G A S A E I T D A Q I T D L V S K L Q Q L I P E L - R A R R S D K V S A A K V L Q E T C N Y I K N
gm022905_Glyma0    M S S R R S R S R Q S G V S T E I T D A Q I T D L I S K L Q Q L I P E L - R A R R S D K V S A S K V L Q E T C N Y I K S
gm049258_Glyma1    M S S R R S R S S Q S D V S T E I T D A Q I T D I I S K L Q Q L I P E L - D A R R S D K V S A S K V L Q E T C N Y I K S
gm010049_Glyma0    M S S R R S R S R Q T S S S R N I T D D Q I N D L V S K L Q Q L L P E I - R D R R S D K V S A S K V L Q E T C N Y I R S
 
AT5G39860.1     L N R E V D N L S E R L S Q L L E S V D E D S P E A A V I R S L L M -
gm050375_Glyma1    L H R E V S D L S E R L S Q L L T T I D A D S A E A G I I R S L L N Q
gm025833_Glyma0    L H R E V S D L S E R L S Q L L T T I D A D S A E A G I I R S L L N -
gm035037_Glyma1    L H R E V D D L S E R L S Q L L A T I D A D S P E A A I I R S L I N -
gm000625_Glyma0    L H R E V D D L S D R L S E L L A N T D S N S A Q A A I I R S L L M -
gm015729_Glyma0    L H R E V G D L S E R L S E L L D T T D - - T A Q A A I I R N L L M Q
gm002763_Glyma0    L H R E V D D L S D R L S E L L A N T D S N S A Q A A I I R S L L M -
gm022905_Glyma0    L H R E V D D L S D R L S Q L L A T T D S N S A Q A A I I R S L L M -
gm049258_Glyma1    L H R E V D D L S D R L S Q L L A T T D S N S A Q A A I I R S L L L -
gm010049_Glyma0    L H R E V D D L S E R L S E L L A T T D - - T A Q A A I I R N L L M Q
 
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