fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40310.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003414 not found in 336aa AT3G27970.1 1st_not 0.74 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G40310.1     -------MDTCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREH
pt003414_POPTR_ MESRNESSEISRNKCAACFRQFNKMEHLVEHMRISYHSVHEPMCGICKKHCRSYESLREH
                        : .****..*:***** ***************** ****:*****::*****

AT5G40310.1     LIGPLPKQECKNIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNN
pt003414_POPTR_ VIGPLPKQECKNIFSIRGCKFCLTILDSPNARRVHQERCQLS-------------GLRDN
                :******************:******:******:********             ***:*

AT5G40310.1     STIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYR
pt003414_POPTR_ LTIDNGYARGRQVVALACKMVGGGSDGSIDLCARVCLIDENENIIFHTYVKPPIPVTNYR
                 ***   :*. :****:***********:*******: **.**::*******.*******

AT5G40310.1     YEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQ
pt003414_POPTR_ YETTGIRPEYLRDATPLRQVQKKIQDFLCNGEPTWKIRPRGGKARILVGHDLDR----LQ
                ** ****** ****  *::.*:*:*:******* ******.*********.**.    **

AT5G40310.1     LEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRM
pt003414_POPTR_ LEYPAVMMRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGMQDPYEDCVATMRLYIRM
                ***.: *:****:******:*******************:.*:************** **

AT5G40310.1     RYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDSVA
pt003414_POPTR_ RSQNHTIEDYPLAFDPQNRNNFASWRQSELERMSPEEMFAISRSDYYCWCLDS--
                * *:*  * **** *.**:****:***.*********:: :************
BoxShade v3.31 C (beta, 970507) Output
AT5G40310.1     - - - - - - - M D T C R N K C G G C Y R Q F N K K E H L V E H M R I S Y H S V H E P T C G I C N K H C R S F D S L R E H
pt003414_POPTR_    M E S R N E S S E I S R N K C A A C F R Q F N K M E H L V E H M R I S Y H S V H E P M C G I C K K H C R S Y E S L R E H
 
AT5G40310.1     L I G P L P K Q E C K N I F S I R G C R F C L T I L E S P N A R R I H Q E R C Q L S N V T S G L M I R M A A L G L R N N
pt003414_POPTR_    V I G P L P K Q E C K N I F S I R G C K F C L T I L D S P N A R R V H Q E R C Q L S - - - - - - - - - - - - - G L R D N
 
AT5G40310.1     S T I D Y T S S R S P R V V A L S C K M V G G G S D G S L D L C A R V C I T D E S E N V V F H T Y V K P T I P V T N Y R
pt003414_POPTR_    L T I D N G Y A R G R Q V V A L A C K M V G G G S D G S I D L C A R V C L I D E N E N I I F H T Y V K P P I P V T N Y R
 
AT5G40310.1     Y E M T G I R P E N L R D A M R L K H A Q R K V Q E F L C N G E P M W K I R P R N G K A R I L V G H G L D N H L D S L Q
pt003414_POPTR_    Y E T T G I R P E Y L R D A T P L R Q V Q K K I Q D F L C N G E P T W K I R P R G G K A R I L V G H D L D R - - - - L Q
 
AT5G40310.1     L E Y S S S M I R D T A E Y P P L M K S S K L S N S L K Y L T Q A Y L G Y D I H V G I Q D P Y E D C V A T M R L Y T R M
pt003414_POPTR_    L E Y P A V M M R D T A K Y P P L M K T S K L S N S L K Y L T Q A Y L G Y D I Q T G M Q D P Y E D C V A T M R L Y I R M
 
AT5G40310.1     R Y Q K H R A E A Y P L A S D T Q N H N N F A A W R Q N E L E R M S P E E L L D L S R S D Y Y C W C L D S V A
pt003414_POPTR_    R S Q N H T I E D Y P L A F D P Q N R N N F A S W R Q S E L E R M S P E E M F A I S R S D Y Y C W C L D S - -
 
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