fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40310.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt003414 not found in 336aa AT3G27970.1 1st_not 0.74 II
Pt038564 SAQGCDLCLKLYDSPS in 83/357 AT2G48100.3 not_not 0.485714285 III
Pt038565 SAQGCDLCLKLYDSPS in 83/349 AT2G48100.3 not_not 0.467142857 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G40310.1     ----------MDTCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSL
pt003414_POPTR_ MESRNE---SSEISRNKCAACFRQFNKMEHLVEHMRISYHSVHEPMCGICKKHCRSYESL
pt038565_POPTR_ MDAEADPPTRSRTERHKCFACYKQFKKKEHLVEHMKISYHTPHQPKCGVCQKHCKSFESL
pt038564_POPTR_ MDAEADPPTRSRTERHKCFACYKQFKKKEHLVEHMKISYHTPHQPKCGVCQKHCKSFESL
                              *:** .*::**:* *******:****: *:* **:*:***:*::**

AT5G40310.1     REHLIGPLPKQECKNIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALG-
pt003414_POPTR_ REHVIGPLPKQECKNIFSIRGCKFCLTILDSPNARRVHQERCQLS-------------G-
pt038565_POPTR_ RNHLTGPLSRAGCSRTFSAQGCDLCLKLYDSPSSLGKHREICHLS--------APASLGT
pt038564_POPTR_ RNHLTGPLSRAGCSRTFSAQGCDLCLKLYDSPSSLGKHREICHLS--------APASLGT
                *:*: ***.:  *.. ** :** :**.: :**.:   *:* *:**             * 

AT5G40310.1     --LRNNSTIDYTS-SRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPT
pt003414_POPTR_ --LRDNLTIDNGY-ARGRQVVALACKMVGGGSDGSIDLCARVCLIDENENIIFHTYVKPP
pt038565_POPTR_ KILPFAGSVDVKYTTKGAKAIAINCGLVGGGTDGSLDLCARVCLVDEDENIIFHTYVQPQ
pt038564_POPTR_ KILPFAGSVDVKYTTKGAKAIAINCGLVGGGTDGSLDLCARVCLVDEDENIIFHTYVQPQ
                  *    ::*    ::. :.:*: * :****:***:*******: **.**::*****:* 

AT5G40310.1     IPVTNYRYEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLD
pt003414_POPTR_ IPVTNYRYETTGIRPEYLRDATPLRQVQKKIQDFLCNGEPTWKIRPRGGKARILVGHDLD
pt038565_POPTR_ SAVTDYRYEITGLTEEHLRNSKSHKEVQDRILEILYNGESARRLMSDSGKARLLVGHDLK
pt038564_POPTR_ SAVTDYRYEITGLTEEHLRNSKSHKEVQDRILEILYNGESARRLMSDSGKARLLVGHDLK
                 .**:**** **:  * **::   :..* :: ::* ***.  :: . .****:****.*.

AT5G40310.1     NHLDSLQLEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVAT
pt003414_POPTR_ R----LQLEYPAVMMRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGMQDPYEDCVAT
pt038565_POPTR_ RGLDCLRINYPGHLLRDTAKYRPLLKTNLVSHSLK--------YDIQTGEHDPYVDCVSV
pt038564_POPTR_ RGLDCLRINYPGHLLRDTAKYRPLLKTNLVSHSLKYLTKTYLGYDIQTGEHDPYVDCVSV
                .    *:::*.. ::****:* **:*:. :*:***        ***:.* :*** ***:.

AT5G40310.1     MRLYTRMRYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDS
pt003414_POPTR_ MRLYIRMRSQNHTIEDYPLAFDPQNRNNFASWRQSELERMSPEEMFAISRSDYYCWCLDS
pt038565_POPTR_ MRLYKRMRAQDHQGKG---IGTPNSDSGFESQKAEELENMTPDELYQISKSDYKCWCLDS
pt038564_POPTR_ MRLYKRMRAQDHQGKG---IGTPNSDSGFESQKAEELENMTPDELYQISKSDYKCWCLDS
                **** *** *.*  :       .:. ..* : : .***.*:*:*:  :*:*** ******

AT5G40310.1     VA------
pt003414_POPTR_ --------
pt038565_POPTR_ SIAAGLNS
pt038564_POPTR_ SIAAGLNS
BoxShade v3.31 C (beta, 970507) Output
AT5G40310.1     - - - - - - - - - - M D T C R N K C G G C Y R Q F N K K E H L V E H M R I S Y H S V H E P T C G I C N K H C R S F D S L
pt003414_POPTR_    M E S R N E - - - S S E I S R N K C A A C F R Q F N K M E H L V E H M R I S Y H S V H E P M C G I C K K H C R S Y E S L
pt038565_POPTR_    M D A E A D P P T R S R T E R H K C F A C Y K Q F K K K E H L V E H M K I S Y H T P H Q P K C G V C Q K H C K S F E S L
pt038564_POPTR_    M D A E A D P P T R S R T E R H K C F A C Y K Q F K K K E H L V E H M K I S Y H T P H Q P K C G V C Q K H C K S F E S L
 
AT5G40310.1     R E H L I G P L P K Q E C K N I F S I R G C R F C L T I L E S P N A R R I H Q E R C Q L S N V T S G L M I R M A A L G -
pt003414_POPTR_    R E H V I G P L P K Q E C K N I F S I R G C K F C L T I L D S P N A R R V H Q E R C Q L S - - - - - - - - - - - - - G -
pt038565_POPTR_    R N H L T G P L S R A G C S R T F S A Q G C D L C L K L Y D S P S S L G K H R E I C H L S - - - - - - - - A P A S L G T
pt038564_POPTR_    R N H L T G P L S R A G C S R T F S A Q G C D L C L K L Y D S P S S L G K H R E I C H L S - - - - - - - - A P A S L G T
 
AT5G40310.1     - - L R N N S T I D Y T S - S R S P R V V A L S C K M V G G G S D G S L D L C A R V C I T D E S E N V V F H T Y V K P T
pt003414_POPTR_    - - L R D N L T I D N G Y - A R G R Q V V A L A C K M V G G G S D G S I D L C A R V C L I D E N E N I I F H T Y V K P P
pt038565_POPTR_    K I L P F A G S V D V K Y T T K G A K A I A I N C G L V G G G T D G S L D L C A R V C L V D E D E N I I F H T Y V Q P Q
pt038564_POPTR_    K I L P F A G S V D V K Y T T K G A K A I A I N C G L V G G G T D G S L D L C A R V C L V D E D E N I I F H T Y V Q P Q
 
AT5G40310.1     I P V T N Y R Y E M T G I R P E N L R D A M R L K H A Q R K V Q E F L C N G E P M W K I R P R N G K A R I L V G H G L D
pt003414_POPTR_    I P V T N Y R Y E T T G I R P E Y L R D A T P L R Q V Q K K I Q D F L C N G E P T W K I R P R G G K A R I L V G H D L D
pt038565_POPTR_    S A V T D Y R Y E I T G L T E E H L R N S K S H K E V Q D R I L E I L Y N G E S A R R L M S D S G K A R L L V G H D L K
pt038564_POPTR_    S A V T D Y R Y E I T G L T E E H L R N S K S H K E V Q D R I L E I L Y N G E S A R R L M S D S G K A R L L V G H D L K
 
AT5G40310.1     N H L D S L Q L E Y S S S M I R D T A E Y P P L M K S S K L S N S L K Y L T Q A Y L G Y D I H V G I Q D P Y E D C V A T
pt003414_POPTR_    R - - - - L Q L E Y P A V M M R D T A K Y P P L M K T S K L S N S L K Y L T Q A Y L G Y D I Q T G M Q D P Y E D C V A T
pt038565_POPTR_    R G L D C L R I N Y P G H L L R D T A K Y R P L L K T N L V S H S L K - - - - - - - - Y D I Q T G E H D P Y V D C V S V
pt038564_POPTR_    R G L D C L R I N Y P G H L L R D T A K Y R P L L K T N L V S H S L K Y L T K T Y L G Y D I Q T G E H D P Y V D C V S V
 
AT5G40310.1     M R L Y T R M R Y Q K H R A E A Y P L A S D T Q N H N N F A A W R Q N E L E R M S P E E L L D L S R S D Y Y C W C L D S
pt003414_POPTR_    M R L Y I R M R S Q N H T I E D Y P L A F D P Q N R N N F A S W R Q S E L E R M S P E E M F A I S R S D Y Y C W C L D S
pt038565_POPTR_    M R L Y K R M R A Q D H Q G K G - - - I G T P N S D S G F E S Q K A E E L E N M T P D E L Y Q I S K S D Y K C W C L D S
pt038564_POPTR_    M R L Y K R M R A Q D H Q G K G - - - I G T P N S D S G F E S Q K A E E L E N M T P D E L Y Q I S K S D Y K C W C L D S
 
AT5G40310.1     V A - - - - - -
pt003414_POPTR_    - - - - - - - -
pt038565_POPTR_    S I A A G L N S
pt038564_POPTR_    S I A A G L N S
 
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