fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40310.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm051356 not found in 346aa AT3G27970.1 1st_not 0.738571428 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G40310.1     MD-------TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREH
gm051356_Glyma1 MDCRIESAETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCGICRKHCRSFESLREH
                **       * ****..*:***** **********************.******:*****

AT5G40310.1     LIGPLPKQECKNIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNN
gm051356_Glyma1 LIGPLPKQECRDIFSYRGCKFCLKVFESPNSRRIHQEKCQLSGTNAGIIGRFSNLGLRDN
                **********::*** ***:***.::****:******:****...:*:: *:: ****:*

AT5G40310.1     STIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYR
gm051356_Glyma1 LAIG-GGARGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIPVANYR
                 :*.  .:*.*:****:*******************: ** **::**:****.***:***

AT5G40310.1     YEMTGIRPENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQ
gm051356_Glyma1 YETTGITPEYLRDAMPMRHVQRRIHDFLCNGEPMWTIRARGGRARILVGHGLDHDLESLQ
                ** *** ** ***** ::*.**::::*********.**.*.*:**********:.*:***

AT5G40310.1     LEYSSSMIRDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRM
gm051356_Glyma1 IEYRAEKIRDTAKYPPLMKTSKLSNSLK--------YDIQTGIQDPYEDCIATMRLYMRM
                :** :. *****:******:********        ***:.*********:****** **

AT5G40310.1     RYQKHRAEAYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLDSVA
gm051356_Glyma1 RSQAHRVQEYPLASDPQNRNNFASWRQSEIERMSPEQMLEISRSDYYCWCLDSLY
                * * **.: ******.**:****:***.*:******::*::************:
BoxShade v3.31 C (beta, 970507) Output
AT5G40310.1     M D - - - - - - - T C R N K C G G C Y R Q F N K K E H L V E H M R I S Y H S V H E P T C G I C N K H C R S F D S L R E H
gm051356_Glyma1    M D C R I E S A E T H R N K C A A C F R Q F N K L E H L V E H M R I S Y H S V H E P T C G I C R K H C R S F E S L R E H
 
AT5G40310.1     L I G P L P K Q E C K N I F S I R G C R F C L T I L E S P N A R R I H Q E R C Q L S N V T S G L M I R M A A L G L R N N
gm051356_Glyma1    L I G P L P K Q E C R D I F S Y R G C K F C L K V F E S P N S R R I H Q E K C Q L S G T N A G I I G R F S N L G L R D N
 
AT5G40310.1     S T I D Y T S S R S P R V V A L S C K M V G G G S D G S L D L C A R V C I T D E S E N V V F H T Y V K P T I P V T N Y R
gm051356_Glyma1    L A I G - G G A R G P Q V V A L A C K M V G G G S D G S L D L C A R V C L I D E H E N I I F H S Y V K P P I P V A N Y R
 
AT5G40310.1     Y E M T G I R P E N L R D A M R L K H A Q R K V Q E F L C N G E P M W K I R P R N G K A R I L V G H G L D N H L D S L Q
gm051356_Glyma1    Y E T T G I T P E Y L R D A M P M R H V Q R R I H D F L C N G E P M W T I R A R G G R A R I L V G H G L D H D L E S L Q
 
AT5G40310.1     L E Y S S S M I R D T A E Y P P L M K S S K L S N S L K Y L T Q A Y L G Y D I H V G I Q D P Y E D C V A T M R L Y T R M
gm051356_Glyma1    I E Y R A E K I R D T A K Y P P L M K T S K L S N S L K - - - - - - - - Y D I Q T G I Q D P Y E D C I A T M R L Y M R M
 
AT5G40310.1     R Y Q K H R A E A Y P L A S D T Q N H N N F A A W R Q N E L E R M S P E E L L D L S R S D Y Y C W C L D S V A
gm051356_Glyma1    R S Q A H R V Q E Y P L A S D P Q N R N N F A S W R Q S E I E R M S P E Q M L E I S R S D Y Y C W C L D S L Y
 
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