fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt023029 not found in 216aa AT5G14750.1 1st_not 0.449561403 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G40330.1     MRMTRDGKEHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNY
pt023029_POPTR_ MQGAGNG---EYRKGLWTEEEDRILTDHVKVHGKGKWNQIAKVTGLKRCGKSCRLRWMNY
                *: : :*   **:***** ***:** *:*:.**:*:**:*** *****************

AT5G40330.1     LSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGD
pt023029_POPTR_ LSPSVKRGVFSEEEDDLIIRLHKLLGNRWSLIAGRVPGRTDNQVKNHWNTHLSKRLGIKQ
                ***.*:** *:::*:****************** ************:*******:**: :

AT5G40330.1     HSTAVKAACGVESPPSMALITTTSSSHQEISGGKNSTLRFDTLVDESKLKPKSKLVHATP
pt023029_POPTR_ KKCKVSASSSKFSEKLGANSRTKLSSNDEPILSHNGEAEIHTEIQDNSEKVKEMTSSQDP
                :.  *.*:..  *    *   *. **::*   .:*.  .:.* :::.. * *.      *

AT5G40330.1     TDVEVAATVPNLFDTFWVLEDDFELSSLTMMDFTNG----YCL--
pt023029_POPTR_ V------LFGDCYDNFWLSNSDPFSCSPNLMEFLDQSLDLFCYNL
                .       . : :*.**: :.*   .* .:*:* :     :*
BoxShade v3.31 C (beta, 970507) Output
AT5G40330.1     M R M T R D G K E H E Y K K G L W T V E E D K I L M D Y V R T H G Q G H W N R I A K K T G L K R C G K S C R L R W M N Y
pt023029_POPTR_    M Q G A G N G - - - E Y R K G L W T E E E D R I L T D H V K V H G K G K W N Q I A K V T G L K R C G K S C R L R W M N Y
 
AT5G40330.1     L S P N V N R G N F T D Q E E D L I I R L H K L L G N R W S L I A K R V P G R T D N Q V K N Y W N T H L S K K L G L G D
pt023029_POPTR_    L S P S V K R G V F S E E E D D L I I R L H K L L G N R W S L I A G R V P G R T D N Q V K N H W N T H L S K R L G I K Q
 
AT5G40330.1     H S T A V K A A C G V E S P P S M A L I T T T S S S H Q E I S G G K N S T L R F D T L V D E S K L K P K S K L V H A T P
pt023029_POPTR_    K K C K V S A S S S K F S E K L G A N S R T K L S S N D E P I L S H N G E A E I H T E I Q D N S E K V K E M T S S Q D P
 
AT5G40330.1     T D V E V A A T V P N L F D T F W V L E D D F E L S S L T M M D F T N G - - - - Y C L - -
pt023029_POPTR_    V - - - - - - L F G D C Y D N F W L S N S D P F S C S P N L M E F L D Q S L D L F C Y N L
 
0