fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt027368 not found in 217aa AT5G14750.1 not_not 0.427631578 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G40330.1     MRMTRDGKEHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNY
pt027368_POPTR_ --MEGAGSR-EYRKGLWTVEEDRILMDYVKVHGKGKWNRAAKVAGLKRGGKSCRLRWMNY
                  *   *.. **:*********:******:.**:*:*** ** :**** ***********

AT5G40330.1     LSPNVNRGNFTDQEEDLIIRLHKLLGNR-----WSLIAKRVPGRTDNQVKNYWNTHLSKK
pt027368_POPTR_ LSPSVKRGAFSEEEDDLIIRLHKLLGNRFLFISWSLIAGRIPGRTDNQVKNHWNTHLSIK
                ***.*:** *:::*:*************     ***** *:**********:****** *

AT5G40330.1     LGLGDHSTAV---KAACGVESPPSMALITTTSSSHQEISGGKNSTLRFDTLVDESKLKPK
pt027368_POPTR_ LGVKKGKSKISSSKFSKKIEA----SFNTKLSSNERLIPSNKTET-ELQNVIEDSHEK--
                **: . .: :   * :  :*:    :: *. **..: *...*..* .::.::::*: *  

AT5G40330.1     SKLVHATPTDVEVAAT-----VPNLFDTFWVLEDDFELSSLTMMDFTNGYCL----
pt027368_POPTR_ ---------EIEITSTHEPILTSDCYENFWLFNDDSYLFTPSLMELLDESLESFMA
                         ::*:::*     ..: ::.**:::**  * : ::*:: :
BoxShade v3.31 C (beta, 970507) Output
AT5G40330.1     M R M T R D G K E H E Y K K G L W T V E E D K I L M D Y V R T H G Q G H W N R I A K K T G L K R C G K S C R L R W M N Y
pt027368_POPTR_    - - M E G A G S R - E Y R K G L W T V E E D R I L M D Y V K V H G K G K W N R A A K V A G L K R G G K S C R L R W M N Y
 
AT5G40330.1     L S P N V N R G N F T D Q E E D L I I R L H K L L G N R - - - - - W S L I A K R V P G R T D N Q V K N Y W N T H L S K K
pt027368_POPTR_    L S P S V K R G A F S E E E D D L I I R L H K L L G N R F L F I S W S L I A G R I P G R T D N Q V K N H W N T H L S I K
 
AT5G40330.1     L G L G D H S T A V - - - K A A C G V E S P P S M A L I T T T S S S H Q E I S G G K N S T L R F D T L V D E S K L K P K
pt027368_POPTR_    L G V K K G K S K I S S S K F S K K I E A - - - - S F N T K L S S N E R L I P S N K T E T - E L Q N V I E D S H E K - -
 
AT5G40330.1     S K L V H A T P T D V E V A A T - - - - - V P N L F D T F W V L E D D F E L S S L T M M D F T N G Y C L - - - -
pt027368_POPTR_    - - - - - - - - - E I E I T S T H E P I L T S D C Y E N F W L F N D D S Y L F T P S L M E L L D E S L E S F M A
 
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