fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40330.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt023029 not found in 216aa AT5G14750.1 1st_not 0.449561403 II
Pt027368 not found in 217aa AT5G14750.1 not_not 0.427631578 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G40330.1     MRMTRDGKEHEYKKGLWTVEEDKILMDYVRTHGQGHWNRIAKKTGLKRCGKSCRLRWMNY
pt023029_POPTR_ ---MQGAGNGEYRKGLWTEEEDRILTDHVKVHGKGKWNQIAKVTGLKRCGKSCRLRWMNY
pt027368_POPTR_ ---MEGAGSREYRKGLWTVEEDRILMDYVKVHGKGKWNRAAKVAGLKRGGKSCRLRWMNY
                    ... . **:***** ***:** *:*:.**:*:**: ** :**** ***********

AT5G40330.1     LSPNVNRGNFTDQEEDLIIRLHKLLGNR-----WSLIAKRVPGRTDNQVKNYWNTHLSKK
pt023029_POPTR_ LSPSVKRGVFSEEEDDLIIRLHKLLGNR-----WSLIAGRVPGRTDNQVKNHWNTHLSKR
pt027368_POPTR_ LSPSVKRGAFSEEEDDLIIRLHKLLGNRFLFISWSLIAGRIPGRTDNQVKNHWNTHLSIK
                ***.*:** *:::*:*************     ***** *:**********:****** :

AT5G40330.1     LGLGDHSTAVKAACGVESPPSMALITTTSSSHQEISGGKNSTLRFDTLVDESKLKPKSKL
pt023029_POPTR_ LGIKQKKCKVSASSSKFSEKLGANSRTKLSSNDEPILSHNGEAEIHTEIQDNSEKVKEMT
pt027368_POPTR_ LGVKKGKSKI--SSSKFSKKIEASFNTKLSSNERLIPSNKTETELQNVIEDSHEKEIEIT
                **: . .  :  :..  *    *   *. **::.   .::   .:.. :::.  *  .  

AT5G40330.1     VHATPTDVEVAATVPNLFDTFWVLEDDFELSSLTMMDFTNG----YCL--
pt023029_POPTR_ SSQDPV------LFGDCYDNFWLSNSDPFSCSPNLMEFLDQSLDLFCYNL
pt027368_POPTR_ STHEPI------LTSDCYENFWLFNDDSYLFTPSLMELLDESLESFMA--
                    *          : ::.**: :.*    : .:*:: :     :
BoxShade v3.31 C (beta, 970507) Output
AT5G40330.1     M R M T R D G K E H E Y K K G L W T V E E D K I L M D Y V R T H G Q G H W N R I A K K T G L K R C G K S C R L R W M N Y
pt023029_POPTR_    - - - M Q G A G N G E Y R K G L W T E E E D R I L T D H V K V H G K G K W N Q I A K V T G L K R C G K S C R L R W M N Y
pt027368_POPTR_    - - - M E G A G S R E Y R K G L W T V E E D R I L M D Y V K V H G K G K W N R A A K V A G L K R G G K S C R L R W M N Y
 
AT5G40330.1     L S P N V N R G N F T D Q E E D L I I R L H K L L G N R - - - - - W S L I A K R V P G R T D N Q V K N Y W N T H L S K K
pt023029_POPTR_    L S P S V K R G V F S E E E D D L I I R L H K L L G N R - - - - - W S L I A G R V P G R T D N Q V K N H W N T H L S K R
pt027368_POPTR_    L S P S V K R G A F S E E E D D L I I R L H K L L G N R F L F I S W S L I A G R I P G R T D N Q V K N H W N T H L S I K
 
AT5G40330.1     L G L G D H S T A V K A A C G V E S P P S M A L I T T T S S S H Q E I S G G K N S T L R F D T L V D E S K L K P K S K L
pt023029_POPTR_    L G I K Q K K C K V S A S S S K F S E K L G A N S R T K L S S N D E P I L S H N G E A E I H T E I Q D N S E K V K E M T
pt027368_POPTR_    L G V K K G K S K I - - S S S K F S K K I E A S F N T K L S S N E R L I P S N K T E T E L Q N V I E D S H E K E I E I T
 
AT5G40330.1     V H A T P T D V E V A A T V P N L F D T F W V L E D D F E L S S L T M M D F T N G - - - - Y C L - -
pt023029_POPTR_    S S Q D P V - - - - - - L F G D C Y D N F W L S N S D P F S C S P N L M E F L D Q S L D L F C Y N L
pt027368_POPTR_    S T H E P I - - - - - - L T S D C Y E N F W L F N D D S Y L F T P S L M E L L D E S L E S F M A - -
 
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