fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40350.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004056 not found in 190aa AT3G27810.1 1st_not 0.564516129 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G40350.1     MEKRESSGGSGSGDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRL
pt004056_POPTR_ MDKTPSN----SQDVEVRKGPWTLEEDLILTNHIANHGEGVWNSLAKAAGLKRTGKSCRL
                *:*  *.    * *.********:****** *:**************:************

AT5G40350.1     RWLNYLRPDVRRGNITPEEQLTIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTKIQKY
pt004056_POPTR_ RWLNYLRPDLRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKH
                *********:*********** *****************************:***:***:

AT5G40350.1     IIKSGETTTVGSQSSEFINHHATTSHVMNDTQETMDMYSPTTSYQ------HASNINQQL
pt004056_POPTR_ -IKQAE--TFAAQSSE-TNEHGSSSSQVSSTTELM-VSNCLPSYQGDVEAFSGGNIPQEL
                 **..*  *..:****  *.*.::*  :..* * * : .  .***       ..** *:*

AT5G40350.1     NYGNYVPESGSIMMPLSVDQSEQNYWSVDDLWPMNIYNGN
pt004056_POPTR_ N---------------------ENYWSMEDLWSMQLLNGD
                *                     :****::***.*:: **:
BoxShade v3.31 C (beta, 970507) Output
AT5G40350.1     M E K R E S S G G S G S G D A E V R K G P W T M E E D L I L I N Y I A N H G E G V W N S L A K S A G L K R T G K S C R L
pt004056_POPTR_    M D K T P S N - - - - S Q D V E V R K G P W T L E E D L I L T N H I A N H G E G V W N S L A K A A G L K R T G K S C R L
 
AT5G40350.1     R W L N Y L R P D V R R G N I T P E E Q L T I M E L H A K W G N R W S K I A K H L P G R T D N E I K N F W R T K I Q K Y
pt004056_POPTR_    R W L N Y L R P D L R R G N I T P E E Q L L I M E L H A K W G N R W S K I A K H L P G R T D N E I K N Y W R T R I Q K H
 
AT5G40350.1     I I K S G E T T T V G S Q S S E F I N H H A T T S H V M N D T Q E T M D M Y S P T T S Y Q - - - - - - H A S N I N Q Q L
pt004056_POPTR_    - I K Q A E - - T F A A Q S S E - T N E H G S S S S Q V S S T T E L M - V S N C L P S Y Q G D V E A F S G G N I P Q E L
 
AT5G40350.1     N Y G N Y V P E S G S I M M P L S V D Q S E Q N Y W S V D D L W P M N I Y N G N
pt004056_POPTR_    N - - - - - - - - - - - - - - - - - - - - - E N Y W S M E D L W S M Q L L N G D
 
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