fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G40710.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt032888 not found in 271aa AT5G40710.1 1st_1st 0.600767754 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G40710.1     MGRSNSQCPSHWILLCFFISSQFWGFSLPTSIIQQNLEGFKDPEDGFHEIHCSRERSRVA
pt032888_POPTR_ MGLTRKQLTILFLCLCFTVFLQLTSVSSSTS-PQGQKETASSSFEHEKEVHCSRERSRAA
                ** :..* .  :: *** :  *: ..* .**  * : *  ... :  :*:********.*

AT5G40710.1     WKIIQEYLMPYVEKERYQLPSTCRVHRDNDIYREQEEHKLRSDINEWRCGFCKKAFYEEK
pt032888_POPTR_ WKIIDEYLMPFVEKERYKISSRCRLHPENDLYRDQEQHKMHVDINEWRCGYCKKTFYEEK
                ****:*****:******::.* **:* :**:**:**:**:: ********:***:*****

AT5G40710.1     YLDKHFDSRHYNLLNASHGKCLSDLCGALHCDLVVDTARLKSKCNPAAAAKNRHLCESLA
pt032888_POPTR_ YLDKHFDNRHYDLLNVSHSKCLADVCGVLHCDLVLDSAPHKTKCNPAATGRNKHLCESLA
                *******.***:***.**.***:*:**.******:*:*  *:******:.:*:*******

AT5G40710.1     NSCFPVNKGSSANRLHDFFLRQFCDAHTCSGGSKPLSQKPKKR-SIVYIIFSIIVLVVLL
pt032888_POPTR_ DSCFPVNEGTSALRLNEFFLRQFCDAHTCSGGRKPFSKGGKKETSTLYVIISVLVLMLLA
                :******:*:** **::*************** **:*:  **. * :*:*:*::**::* 

AT5G40710.1     LYYSFVYLFRRGLKRRSQDLKRIRHNGLKKKPF
pt032888_POPTR_ LFYIFMYLYLRGIKRGSQGLKHISKSGQKKRS-
                *:* *:**: **:** **.**:* :.* **:.
BoxShade v3.31 C (beta, 970507) Output
AT5G40710.1     M G R S N S Q C P S H W I L L C F F I S S Q F W G F S L P T S I I Q Q N L E G F K D P E D G F H E I H C S R E R S R V A
pt032888_POPTR_    M G L T R K Q L T I L F L C L C F T V F L Q L T S V S S S T S - P Q G Q K E T A S S S F E H E K E V H C S R E R S R A A
 
AT5G40710.1     W K I I Q E Y L M P Y V E K E R Y Q L P S T C R V H R D N D I Y R E Q E E H K L R S D I N E W R C G F C K K A F Y E E K
pt032888_POPTR_    W K I I D E Y L M P F V E K E R Y K I S S R C R L H P E N D L Y R D Q E Q H K M H V D I N E W R C G Y C K K T F Y E E K
 
AT5G40710.1     Y L D K H F D S R H Y N L L N A S H G K C L S D L C G A L H C D L V V D T A R L K S K C N P A A A A K N R H L C E S L A
pt032888_POPTR_    Y L D K H F D N R H Y D L L N V S H S K C L A D V C G V L H C D L V L D S A P H K T K C N P A A T G R N K H L C E S L A
 
AT5G40710.1     N S C F P V N K G S S A N R L H D F F L R Q F C D A H T C S G G S K P L S Q K P K K R - S I V Y I I F S I I V L V V L L
pt032888_POPTR_    D S C F P V N E G T S A L R L N E F F L R Q F C D A H T C S G G R K P F S K G G K K E T S T L Y V I I S V L V L M L L A
 
AT5G40710.1     L Y Y S F V Y L F R R G L K R R S Q D L K R I R H N G L K K K P F
pt032888_POPTR_    L F Y I F M Y L Y L R G I K R G S Q G L K H I S K S G Q K K R S -
 
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