fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43170.1 SSHRGFDLNIIPVQGFS at 164/193 in AT5G43170.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm008898 not found in 233aa AT1G27730.1 1st_not 0.411931818 II
Gm014082 not found in 233aa AT1G27730.1 not_not 0.409090909 III
Pt017464 not found in 238aa AT1G27730.1 1st_not 0.414772727 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G43170.1     MALEALNSPRLVEDPLR-FNGV------EQWTKCKKRSKRSRSDLHHNHR-LTEEEYLAF
pt017464_POPTR_ MALEALNSPTTAPPSFQ-FEDLSLPCAGEPWVK-RKRSKRPRLDHQ-----PTEEEYLAL
gm014082_Glyma0 MALEALQSPTTATPSFSPFEETSLSYLETPWTK-GKRSKRSRTEQQLQHPSCTEEEYLAL
gm008898_Glyma0 MALEALQSPRTATPSFSPFEETNLSYLETPWTK-GKRSKRSRMEQQLQHSSCTEEEYLAL
                ******:**  .  .:  *:          *.*  *****.* : :      *******:

AT5G43170.1     CLMLLARDGGDLDSVTVAE--------------KPSYKCGVCYKTFSSYQALGGHKASHR
pt017464_POPTR_ CLVMLAR--GHQKSLTPSTVFTS-------SELKNSYKCSVCNKEFPSYQALGGHKASHR
gm014082_Glyma0 CLIMLAR--GGAGSVSTAKPAVSDNNSAPLSAAKLSYKCSVCNKAFSSYQALGGHKASHR
gm008898_Glyma0 CLIMLAH--GGAGGVPAAKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHR
                **::**:  *   .:. :               * ****.** * *.*************

AT5G43170.1     SLYGGGENDKSTPSTA-------------VKSHVCSVCGKSFATGQALGGHKRCHYDG--
pt017464_POPTR_ KLAGGGEDQTTSSTTTSAITATKTVSNGSGKTHECSICHKTFPTGQALGGHKRCHYEGII
gm014082_Glyma0 KL--AGENHPTSSAVT-----TSSASNGGGRTHECSICHKTFSTGQALGGHKRCHYEG--
gm008898_Glyma0 KL--GGEHHSTSSAVT-----TSSASNGGARTHECSICQKTFPTGQALGGHKRCHYEG--
                .*  .**.. ::.:.:              ::* **:* *:*.*************:*  

AT5G43170.1     ---------GVSNSEGVGSTSHVSSSSHRGFDLNIIPVQGFSP------DDEVMSPMA-T
pt017464_POPTR_ GGGEKSGVTSTSESAGSTNT---RTHSHNEFDLNIPALPEFSSCFSVSGEDEVMSPLPAA
gm014082_Glyma0 ------GNSAVTASEGVGST---HTGSHRDFDLNLPAFPDFSARFFV--DDEVTSPHP-S
gm008898_Glyma0 ------GNSAVTASEGVGST---HTGSHRDFDLNLPAFPDFSTRFFV--DDEVTSPHP-S
                         ..: * *  .*    : **. ****: ..  **.      :*** ** . :

AT5G43170.1     KK-------PRLK-----
pt017464_POPTR_ KKLRISMP-PRFEVSQAQ
gm014082_Glyma0 KKSRFNLTIPKIEIPQY-
gm008898_Glyma0 KKSRLNLTIPKIEIPQY-
                **       *:::
BoxShade v3.31 C (beta, 970507) Output
AT5G43170.1     M A L E A L N S P R L V E D P L R - F N G V - - - - - - E Q W T K C K K R S K R S R S D L H H N H R - L T E E E Y L A F
pt017464_POPTR_    M A L E A L N S P T T A P P S F Q - F E D L S L P C A G E P W V K - R K R S K R P R L D H Q - - - - - P T E E E Y L A L
gm014082_Glyma0    M A L E A L Q S P T T A T P S F S P F E E T S L S Y L E T P W T K - G K R S K R S R T E Q Q L Q H P S C T E E E Y L A L
gm008898_Glyma0    M A L E A L Q S P R T A T P S F S P F E E T N L S Y L E T P W T K - G K R S K R S R M E Q Q L Q H S S C T E E E Y L A L
 
AT5G43170.1     C L M L L A R D G G D L D S V T V A E - - - - - - - - - - - - - - K P S Y K C G V C Y K T F S S Y Q A L G G H K A S H R
pt017464_POPTR_    C L V M L A R - - G H Q K S L T P S T V F T S - - - - - - - S E L K N S Y K C S V C N K E F P S Y Q A L G G H K A S H R
gm014082_Glyma0    C L I M L A R - - G G A G S V S T A K P A V S D N N S A P L S A A K L S Y K C S V C N K A F S S Y Q A L G G H K A S H R
gm008898_Glyma0    C L I M L A H - - G G A G G V P A A K P A V S D N N S A P L P A A K L S Y K C S V C N K A F S S Y Q A L G G H K A S H R
 
AT5G43170.1     S L Y G G G E N D K S T P S T A - - - - - - - - - - - - - V K S H V C S V C G K S F A T G Q A L G G H K R C H Y D G - -
pt017464_POPTR_    K L A G G G E D Q T T S S T T T S A I T A T K T V S N G S G K T H E C S I C H K T F P T G Q A L G G H K R C H Y E G I I
gm014082_Glyma0    K L - - A G E N H P T S S A V T - - - - - T S S A S N G G G R T H E C S I C H K T F S T G Q A L G G H K R C H Y E G - -
gm008898_Glyma0    K L - - G G E H H S T S S A V T - - - - - T S S A S N G G A R T H E C S I C Q K T F P T G Q A L G G H K R C H Y E G - -
 
AT5G43170.1     - - - - - - - - - G V S N S E G V G S T S H V S S S S H R G F D L N I I P V Q G F S P - - - - - - D D E V M S P M A - T
pt017464_POPTR_    G G G E K S G V T S T S E S A G S T N T - - - R T H S H N E F D L N I P A L P E F S S C F S V S G E D E V M S P L P A A
gm014082_Glyma0    - - - - - - G N S A V T A S E G V G S T - - - H T G S H R D F D L N L P A F P D F S A R F F V - - D D E V T S P H P - S
gm008898_Glyma0    - - - - - - G N S A V T A S E G V G S T - - - H T G S H R D F D L N L P A F P D F S T R F F V - - D D E V T S P H P - S
 
AT5G43170.1     K K - - - - - - - P R L K - - - - -
pt017464_POPTR_    K K L R I S M P - P R F E V S Q A Q
gm014082_Glyma0    K K S R F N L T I P K I E I P Q Y -
gm008898_Glyma0    K K S R L N L T I P K I E I P Q Y -
 
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