fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43170.1 SSHRGFDLNIIPVQGFS at 164/193 in AT5G43170.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt017464 not found in 238aa AT1G27730.1 1st_not 0.414772727 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43170.1     MALEALNSPRLVEDPLRFNGV------EQWTKCKKRSKRSRSDLHHNHRLTEEEYLAFCL
pt017464_POPTR_ MALEALNSPTTAPPSFQFEDLSLPCAGEPWVK-RKRSKRPRLD----HQPTEEEYLALCL
                *********  .  .::*:.:      * *.* :*****.* *    *: *******:**

AT5G43170.1     MLLARDGGDLDSVTVAE-------KPSYKCGVCYKTFSSYQALGGHKASHRSLYGGGEND
pt017464_POPTR_ VMLAR--GHQKSLTPSTVFTSSELKNSYKCSVCNKEFPSYQALGGHKASHRKLAGGGE-D
                ::***  *. .*:* :        * ****.** * *.*************.* **** *

AT5G43170.1     KSTPSTAV--------------KSHVCSVCGKSFATGQALGGHKRCHYDGGVSNSE--GV
pt017464_POPTR_ QTTSSTTTSAITATKTVSNGSGKTHECSICHKTFPTGQALGGHKRCHYEGIIGGGEKSGV
                ::*.**:.              *:* **:* *:*.*************:* :...*  **

AT5G43170.1     GSTSHVSSS------SHRGFDLNIIPVQGFSP------DDEVMSPM-ATKK------PRL
pt017464_POPTR_ TSTSESAGSTNTRTHSHNEFDLNIPALPEFSSCFSVSGEDEVMSPLPAAKKLRISMPPRF
                 ***. :.*      **. ***** .:  **.      :******: *:**      **:

AT5G43170.1     K-----
pt017464_POPTR_ EVSQAQ
                :
BoxShade v3.31 C (beta, 970507) Output
AT5G43170.1     M A L E A L N S P R L V E D P L R F N G V - - - - - - E Q W T K C K K R S K R S R S D L H H N H R L T E E E Y L A F C L
pt017464_POPTR_    M A L E A L N S P T T A P P S F Q F E D L S L P C A G E P W V K - R K R S K R P R L D - - - - H Q P T E E E Y L A L C L
 
AT5G43170.1     M L L A R D G G D L D S V T V A E - - - - - - - K P S Y K C G V C Y K T F S S Y Q A L G G H K A S H R S L Y G G G E N D
pt017464_POPTR_    V M L A R - - G H Q K S L T P S T V F T S S E L K N S Y K C S V C N K E F P S Y Q A L G G H K A S H R K L A G G G E - D
 
AT5G43170.1     K S T P S T A V - - - - - - - - - - - - - - K S H V C S V C G K S F A T G Q A L G G H K R C H Y D G G V S N S E - - G V
pt017464_POPTR_    Q T T S S T T T S A I T A T K T V S N G S G K T H E C S I C H K T F P T G Q A L G G H K R C H Y E G I I G G G E K S G V
 
AT5G43170.1     G S T S H V S S S - - - - - - S H R G F D L N I I P V Q G F S P - - - - - - D D E V M S P M - A T K K - - - - - - P R L
pt017464_POPTR_    T S T S E S A G S T N T R T H S H N E F D L N I P A L P E F S S C F S V S G E D E V M S P L P A A K K L R I S M P P R F
 
AT5G43170.1     K - - - - -
pt017464_POPTR_    E V S Q A Q
 
0