fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43170.1 SSHRGFDLNIIPVQGFS at 164/193 in AT5G43170.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm008898 not found in 233aa AT1G27730.1 1st_not 0.411931818 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43170.1     MALEALNSPRLVEDPLRFNGVEQ---------WTKCKKRSKRSRSDLHHNH-RLTEEEYL
gm008898_Glyma0 MALEALQSPRTATP--SFSPFEETNLSYLETPWTK-GKRSKRSRMEQQLQHSSCTEEEYL
                ******:*** .     *. .*:         ***  ******* : : :*   ******

AT5G43170.1     AFCLMLLARDGG-----------DLDSVTV-AEKPSYKCGVCYKTFSSYQALGGHKASHR
gm008898_Glyma0 ALCLIMLAHGGAGGVPAAKPAVSDNNSAPLPAAKLSYKCSVCNKAFSSYQALGGHKASHR
                *:**::**:.*.           * :*..: * * ****.** *:***************

AT5G43170.1     SLYGGGENDKS----TPSTA----VKSHVCSVCGKSFATGQALGGHKRCHYDGG---VSN
gm008898_Glyma0 KL--GGEHHSTSSAVTTSSASNGGARTHECSICQKTFPTGQALGGHKRCHYEGGNSAVTA
                .*  ***:..:    *.*:*    .::* **:* *:*.*************:**   *: 

AT5G43170.1     SEGVGSTSHVSSSSHRGFDLNIIPVQGFSP----DDEVMSPMATKKPRLK----------
gm008898_Glyma0 SEGVGST---HTGSHRDFDLNLPAFPDFSTRFFVDDEVTSPHPSKKSRLNLTIPKIEIPQ
                *******    :.***.****: .. .**.    **** ** .:**.**:          

AT5G43170.1     -
gm008898_Glyma0 Y
BoxShade v3.31 C (beta, 970507) Output
AT5G43170.1     M A L E A L N S P R L V E D P L R F N G V E Q - - - - - - - - - W T K C K K R S K R S R S D L H H N H - R L T E E E Y L
gm008898_Glyma0    M A L E A L Q S P R T A T P - - S F S P F E E T N L S Y L E T P W T K - G K R S K R S R M E Q Q L Q H S S C T E E E Y L
 
AT5G43170.1     A F C L M L L A R D G G - - - - - - - - - - - D L D S V T V - A E K P S Y K C G V C Y K T F S S Y Q A L G G H K A S H R
gm008898_Glyma0    A L C L I M L A H G G A G G V P A A K P A V S D N N S A P L P A A K L S Y K C S V C N K A F S S Y Q A L G G H K A S H R
 
AT5G43170.1     S L Y G G G E N D K S - - - - T P S T A - - - - V K S H V C S V C G K S F A T G Q A L G G H K R C H Y D G G - - - V S N
gm008898_Glyma0    K L - - G G E H H S T S S A V T T S S A S N G G A R T H E C S I C Q K T F P T G Q A L G G H K R C H Y E G G N S A V T A
 
AT5G43170.1     S E G V G S T S H V S S S S H R G F D L N I I P V Q G F S P - - - - D D E V M S P M A T K K P R L K - - - - - - - - - -
gm008898_Glyma0    S E G V G S T - - - H T G S H R D F D L N L P A F P D F S T R F F V D D E V T S P H P S K K S R L N L T I P K I E I P Q
 
AT5G43170.1     -
gm008898_Glyma0    Y
 
0