fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43250.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm032035 not found in 168aa AT5G43250.1 not_1st 0.565891472 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43250.1     --MEEEEG-SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVT
gm032035_Glyma1 MADEEENGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVA
                   ***:* **: *** ******* ****::::.****.::: ******:******* *:

AT5G43250.1     AEKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQ---PVKHTKSVSDKKIPAPPIGTR
gm032035_Glyma1 IEKKRKTVNLEHIRVAVKRHQPTRDFLLDELPPPSQAAKPDKPTQPAGRPKLDPAPRGTR
                 *********:*:*:******** *****.** *:*   * * *:...  *: ..* ***

AT5G43250.1     RIDDFFSK----------GKAKTDSA----------------------
gm032035_Glyma1 CIDQFFRKPEPENTAQAPGQPPENPAQAQSPENPDQDQAQSPVPVDES
                 **:** *          *:.  :.*
BoxShade v3.31 C (beta, 970507) Output
AT5G43250.1     - - M E E E E G - S I R P E F P I G R V K K I M K L D K D I N K I N S E A L H V I T Y S T E L F L H F L A E K S A V V T
gm032035_Glyma1    M A D E E E N G V S I Q L E F P K G R V K K I M A L D K D V K R V S S E A L F L V S R S T E L F L Q F L A E K S A Q V A
 
AT5G43250.1     A E K K R K T V N L D H L R I A V K R H Q P T S D F L L D S L P L P A Q - - - P V K H T K S V S D K K I P A P P I G T R
gm032035_Glyma1    I E K K R K T V N L E H I R V A V K R H Q P T R D F L L D E L P P P S Q A A K P D K P T Q P A G R P K L D P A P R G T R
 
AT5G43250.1     R I D D F F S K - - - - - - - - - - G K A K T D S A - - - - - - - - - - - - - - - - - - - - - -
gm032035_Glyma1    C I D Q F F R K P E P E N T A Q A P G Q P P E N P A Q A Q S P E N P D Q D Q A Q S P V P V D E S
 
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