fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43250.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm048281 not found in 166aa AT5G43250.1 1st_1st 0.577519379 Ia
Gm032035 not found in 168aa AT5G43250.1 not_1st 0.565891472 II
Pt032517 not found in 145aa AT5G43250.1 1st_1st 0.581395348 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G43250.1     -MEEEEG-----SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSA
pt032517_POPTR_ MVESEENKTETTTTRPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSA
gm032035_Glyma1 MADEEENGV---SIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSA
gm048281_Glyma1 MAEEEESGV---SIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSA
                  :.**.     : : *** **:*:** **** :::.::**.::: ******:*******

AT5G43250.1     VVTAEKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQPVKH-------TKSVSDKKIP
pt032517_POPTR_ EVAIEKKRKIVKLDHIRAAVKRHHPTSDFLLDSLPLPAQSSEKPASDNTSARTVTDKPAP
gm032035_Glyma1 QVAIEKKRKTVNLEHIRVAVKRHQPTRDFLLDELPPPSQAAKP---DKPTQPAGRPKLDP
gm048281_Glyma1 QVAIEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQPTKP---DRPTQPAGRPKLDP
                 *: ***** *:*:*:* *****:** *****.** *:*. :          :   *  *

AT5G43250.1     APPIGTRRIDDFFSK----------GKAKTDSA----------------------
pt032517_POPTR_ A---GTRRIDQFFAK----------AASEEVPVL-----------------INES
gm032035_Glyma1 APR-GTRCIDQFFRKPEPENTAQAPGQPPENPAQAQSPENPDQDQAQSPVPVDES
gm048281_Glyma1 PPR-GTRRIDLFFRKPELDDPAQA--QPPENPAQAQPPENPDQDQAQSPVPVDES
                .   *** ** ** *            .   ..
BoxShade v3.31 C (beta, 970507) Output
AT5G43250.1     - M E E E E G - - - - - S I R P E F P I G R V K K I M K L D K D I N K I N S E A L H V I T Y S T E L F L H F L A E K S A
pt032517_POPTR_    M V E S E E N K T E T T T T R P E F P T G R I K R I M K L D K D T N K V N A D A L F L V S S S T E L F L R F L A E K S A
gm032035_Glyma1    M A D E E E N G V - - - S I Q L E F P K G R V K K I M A L D K D V K R V S S E A L F L V S R S T E L F L Q F L A E K S A
gm048281_Glyma1    M A E E E E S G V - - - S I Q L E F P K G R V K K I M A L D K D V K R V S S E A L F L V S R S T E L F L Q F L A E K S A
 
AT5G43250.1     V V T A E K K R K T V N L D H L R I A V K R H Q P T S D F L L D S L P L P A Q P V K H - - - - - - - T K S V S D K K I P
pt032517_POPTR_    E V A I E K K R K I V K L D H I R A A V K R H H P T S D F L L D S L P L P A Q S S E K P A S D N T S A R T V T D K P A P
gm032035_Glyma1    Q V A I E K K R K T V N L E H I R V A V K R H Q P T R D F L L D E L P P P S Q A A K P - - - D K P T Q P A G R P K L D P
gm048281_Glyma1    Q V A I E K K R K T V N L E H I R E A V K R H Q P T R D F L L D E L P P P S Q P T K P - - - D R P T Q P A G R P K L D P
 
AT5G43250.1     A P P I G T R R I D D F F S K - - - - - - - - - - G K A K T D S A - - - - - - - - - - - - - - - - - - - - - -
pt032517_POPTR_    A - - - G T R R I D Q F F A K - - - - - - - - - - A A S E E V P V L - - - - - - - - - - - - - - - - - I N E S
gm032035_Glyma1    A P R - G T R C I D Q F F R K P E P E N T A Q A P G Q P P E N P A Q A Q S P E N P D Q D Q A Q S P V P V D E S
gm048281_Glyma1    P P R - G T R R I D L F F R K P E L D D P A Q A - - Q P P E N P A Q A Q P P E N P D Q D Q A Q S P V P V D E S
 
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