fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43250.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt032517 not found in 145aa AT5G43250.1 1st_1st 0.581395348 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43250.1     -MEEEEG-----SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSA
pt032517_POPTR_ MVESEENKTETTTTRPEFPTGRIKRIMKLDKDTNKVNADALFLVSSSTELFLRFLAEKSA
                 :*.**.     : ***** **:*:******* **:*::**.::: ******:*******

AT5G43250.1     VVTAEKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQPVKH-------TKSVSDKKIP
pt032517_POPTR_ EVAIEKKRKIVKLDHIRAAVKRHHPTSDFLLDSLPLPAQSSEKPASDNTSARTVTDKPAP
                 *: ***** *:***:* *****:***************. ::       :::*:**  *

AT5G43250.1     APPIGTRRIDDFFSKGKAKTDSA-----
pt032517_POPTR_ A---GTRRIDQFFAKAASEEVPVLINES
                *   ******:**:*. ::  ..
BoxShade v3.31 C (beta, 970507) Output
AT5G43250.1     - M E E E E G - - - - - S I R P E F P I G R V K K I M K L D K D I N K I N S E A L H V I T Y S T E L F L H F L A E K S A
pt032517_POPTR_    M V E S E E N K T E T T T T R P E F P T G R I K R I M K L D K D T N K V N A D A L F L V S S S T E L F L R F L A E K S A
 
AT5G43250.1     V V T A E K K R K T V N L D H L R I A V K R H Q P T S D F L L D S L P L P A Q P V K H - - - - - - - T K S V S D K K I P
pt032517_POPTR_    E V A I E K K R K I V K L D H I R A A V K R H H P T S D F L L D S L P L P A Q S S E K P A S D N T S A R T V T D K P A P
 
AT5G43250.1     A P P I G T R R I D D F F S K G K A K T D S A - - - - -
pt032517_POPTR_    A - - - G T R R I D Q F F A K A A S E E V P V L I N E S
 
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