fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43250.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm048281 not found in 166aa AT5G43250.1 1st_1st 0.577519379 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43250.1     -MEEEEG--SIRPEFPIGRVKKIMKLDKDINKINSEALHVITYSTELFLHFLAEKSAVVT
gm048281_Glyma1 MAEEEESGVSIQLEFPKGRVKKIMALDKDVKRVSSEALFLVSRSTELFLQFLAEKSAQVA
                  ****.  **: *** ******* ****::::.****.::: ******:******* *:

AT5G43250.1     AEKKRKTVNLDHLRIAVKRHQPTSDFLLDSLPLPAQPVK---HTKSVSDKKIPAPPIGTR
gm048281_Glyma1 IEKKRKTVNLEHIREAVKRHQPTRDFLLDELPPPSQPTKPDRPTQPAGRPKLDPPPRGTR
                 *********:*:* ******** *****.** *:**.*    *:...  *: .** ***

AT5G43250.1     RIDDFFSK---------------GKAK------TDSA---------
gm048281_Glyma1 RIDLFFRKPELDDPAQAQPPENPAQAQPPENPDQDQAQSPVPVDES
                *** ** *               .:*:       *.*
BoxShade v3.31 C (beta, 970507) Output
AT5G43250.1     - M E E E E G - - S I R P E F P I G R V K K I M K L D K D I N K I N S E A L H V I T Y S T E L F L H F L A E K S A V V T
gm048281_Glyma1    M A E E E E S G V S I Q L E F P K G R V K K I M A L D K D V K R V S S E A L F L V S R S T E L F L Q F L A E K S A Q V A
 
AT5G43250.1     A E K K R K T V N L D H L R I A V K R H Q P T S D F L L D S L P L P A Q P V K - - - H T K S V S D K K I P A P P I G T R
gm048281_Glyma1    I E K K R K T V N L E H I R E A V K R H Q P T R D F L L D E L P P P S Q P T K P D R P T Q P A G R P K L D P P P R G T R
 
AT5G43250.1     R I D D F F S K - - - - - - - - - - - - - - - G K A K - - - - - - T D S A - - - - - - - - -
gm048281_Glyma1    R I D L F F R K P E L D D P A Q A Q P P E N P A Q A Q P P E N P D Q D Q A Q S P V P V D E S
 
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