fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035968 not found in 148aa AT3G23230.1 1st_not 0.580246913 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43410.1     MDQGGRG-----VGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAY
pt035968_POPTR_ MEEPDKGKEKELKGREEVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDTAEEAARAY
                *:: .:*      * *. :***********:******. ::* *:***************

AT5G43410.1     DQAAYSMRGQAAILNFPHEY---NMGSG-----VSSSTAMAGSSSASASASSSS----RQ
pt035968_POPTR_ DRAAFSMRGHLAILNFPNDYLSQAIGSSPRRPPVSSSSSDVGASESFQRGSSSSAGQGKQ
                *:**:****: ******::*    :**.     ****:: .*:*.:   .****    :*

AT5G43410.1     VFEFEYLDDSVLEELLEEGEKPNKGKKK
pt035968_POPTR_ VIEFEYLDDKILEELLETEEEKKKRQQD
                *:*******.:******  *: :* ::.
BoxShade v3.31 C (beta, 970507) Output
AT5G43410.1     M D Q G G R G - - - - - V G A E H G K Y R G V R R R P W G K Y A A E I R D S R K H G E R V W L G T F D T A E E A A R A Y
pt035968_POPTR_    M E E P D K G K E K E L K G R E E V R Y R G V R R R P W G K F A A E I R D P S R Q G A R L W L G T F D T A E E A A R A Y
 
AT5G43410.1     D Q A A Y S M R G Q A A I L N F P H E Y - - - N M G S G - - - - - V S S S T A M A G S S S A S A S A S S S S - - - - R Q
pt035968_POPTR_    D R A A F S M R G H L A I L N F P N D Y L S Q A I G S S P R R P P V S S S S S D V G A S E S F Q R G S S S S A G Q G K Q
 
AT5G43410.1     V F E F E Y L D D S V L E E L L E E G E K P N K G K K K
pt035968_POPTR_    V I E F E Y L D D K I L E E L L E T E E E K K K R Q Q D
 
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