fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os016553 not found in 128aa AT5G43410.1 not_1st 0.518518518 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43410.1     MDQGGRGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAY
Os016553_Os04t0 MEDDKKEAAS---KYRGVRRRPWGKFAAEIRDPERGGSRVWLGTFDTAEEAARAYDRAAF
                *::. : ..:   ************:******..: *.******************:**:

AT5G43410.1     SMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASAS-SSSRQV------FEFEYLDDS
Os016553_Os04t0 AMKGAMAVLNFP-------GRTSSTGSSSSSSSTPPAPVTTSRHCADTTEKVELVYLDDK
                :*:*  *:****       * :***. :.***::..*. ::**:       .*: ****.

AT5G43410.1     VLEELLEEGEKPNKGKKK
Os016553_Os04t0 VLDELLAEDYSYRNNNNY
                **:*** *. . .:.::
BoxShade v3.31 C (beta, 970507) Output
AT5G43410.1     M D Q G G R G V G A E H G K Y R G V R R R P W G K Y A A E I R D S R K H G E R V W L G T F D T A E E A A R A Y D Q A A Y
Os016553_Os04t0    M E D D K K E A A S - - - K Y R G V R R R P W G K F A A E I R D P E R G G S R V W L G T F D T A E E A A R A Y D R A A F
 
AT5G43410.1     S M R G Q A A I L N F P H E Y N M G S G V S S S T A M A G S S S A S A S A S - S S S R Q V - - - - - - F E F E Y L D D S
Os016553_Os04t0    A M K G A M A V L N F P - - - - - - - G R T S S T G S S S S S S S T P P A P V T T S R H C A D T T E K V E L V Y L D D K
 
AT5G43410.1     V L E E L L E E G E K P N K G K K K
Os016553_Os04t0    V L D E L L A E D Y S Y R N N N N Y
 
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