fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43410.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055289 not found in 147aa AT1G04370.1 1st_not 0.611111111 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43410.1     MD-QGGRGVGAEHG---KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYD
gm055289_Glyma2 MDEEGSRGRAKEDAGDVRYRGVRRRPWGKFAAEIRDSTRQGQRVWLGTFNTAEEAARAYD
                ** :*.** . *..   :***********:******* ::*:*******:**********

AT5G43410.1     QAAYSMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSS--------------R
gm055289_Glyma2 RAAYAMRGPFAILNFPDEYPMTAGGATNAATYSSAASSSSSASSSRHANVEARGRSEQGR
                :***:***  ******.** * :* ::.:*  .*:::*:*::***              *

AT5G43410.1     QVFEFEYLDDSVLEELLEEGEKPNKGKKK
gm055289_Glyma2 EVFEFEYLDDRLLEELLDCEDKKKRGP--
                :********* :*****:  :* ::*
BoxShade v3.31 C (beta, 970507) Output
AT5G43410.1     M D - Q G G R G V G A E H G - - - K Y R G V R R R P W G K Y A A E I R D S R K H G E R V W L G T F D T A E E A A R A Y D
gm055289_Glyma2    M D E E G S R G R A K E D A G D V R Y R G V R R R P W G K F A A E I R D S T R Q G Q R V W L G T F N T A E E A A R A Y D
 
AT5G43410.1     Q A A Y S M R G Q A A I L N F P H E Y N M G S G V S S S T A M A G S S S A S A S A S S S S - - - - - - - - - - - - - - R
gm055289_Glyma2    R A A Y A M R G P F A I L N F P D E Y P M T A G G A T N A A T Y S S A A S S S S S A S S S R H A N V E A R G R S E Q G R
 
AT5G43410.1     Q V F E F E Y L D D S V L E E L L E E G E K P N K G K K K
gm055289_Glyma2    E V F E F E Y L D D R L L E E L L D C E D K K K R G P - -
 
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