fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43700.1 NLKATELRLGLPGTEE at 16/186 in AT5G43700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm004012 NLEATELRLGLPGSDE in 18/202 AT5G43700.1 1st_1st 0.650130548 Ia
Pt035517 NLKATELRLGLPGTSC in 122/297 AT5G43700.1 1st_1st 0.647519582 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G43700.1     ------------------------------------------------------------
pt035517_POPTR_ MADHVHTISYMSCCLKGAAIATDRLSLPLSIIHAFEERITRHFSQPLPFVYKIHLFPFTP
gm004012_Glyma0 ------------------------------------------------------------
                                                                            

AT5G43700.1     ---------------------------------------------MEKVDV-YDELVNLK
pt035517_POPTR_ ASPHRKTSYHFSQESLPKEITRATSKSCIHHLLAVPVFEQRLLENMEGGVA-YENDLNLK
gm004012_Glyma0 ---------------------------------------------MENSLGKYGKELNLE
                                                             **     * : :**:

AT5G43700.1     ATELRLGLPGT-----EETVSCGKSNKRVLPEATEKEIESTGK------T-------ETA
pt035517_POPTR_ ATELRLGLPGTSCTNEEQAVSGARNNKRPLPE-TREERGAKGK------SDPRHDDQETA
gm004012_Glyma0 ATELRLGLPGS---DEPEKRSAVRSNKRSSPEASEEECISKGNMNSSDGSDITSDDQDNV
                **********:      :  *  :.***  ** :.:*  :.*:      :       :..

AT5G43700.1     SPP-KAQIVGWPPVRSYRKNNVQTKKSESE-GQGNYVKVSMDGAPYLRKIDLTMYKQYPE
pt035517_POPTR_ PAP-KAQIVGWPPIRSYRKNTLQPKKAEAEAAAGMYVKVSMDGAPYLRKIDLKVYKGYPE
gm004012_Glyma0 VPPAKAQVVGWPPVRSYRKNSLQQKKEEQAEGAGMYVKVSMEGAPYLRKIDLKVYKSYPE
                 .* ***:*****:******.:* ** *   . * ******:**********.:** ***

AT5G43700.1     LMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMK
pt035517_POPTR_ LLKALENMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLIGDVPWDMFLSSCKKLRIIK
gm004012_Glyma0 LLKALENMFKCTFGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIMK
                *:*:****** :.*:* *****:**::.************:*****:**:****:***:*

AT5G43700.1     GSEVKGLGCGGL
pt035517_POPTR_ GSEATG------
gm004012_Glyma0 GSEAKGLGCF--
                ***..*
BoxShade v3.31 C (beta, 970507) Output
AT5G43700.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt035517_POPTR_    M A D H V H T I S Y M S C C L K G A A I A T D R L S L P L S I I H A F E E R I T R H F S Q P L P F V Y K I H L F P F T P
gm004012_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT5G43700.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E K V D V - Y D E L V N L K
pt035517_POPTR_    A S P H R K T S Y H F S Q E S L P K E I T R A T S K S C I H H L L A V P V F E Q R L L E N M E G G V A - Y E N D L N L K
gm004012_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E N S L G K Y G K E L N L E
 
AT5G43700.1     A T E L R L G L P G T - - - - - E E T V S C G K S N K R V L P E A T E K E I E S T G K - - - - - - T - - - - - - - E T A
pt035517_POPTR_    A T E L R L G L P G T S C T N E E Q A V S G A R N N K R P L P E - T R E E R G A K G K - - - - - - S D P R H D D Q E T A
gm004012_Glyma0    A T E L R L G L P G S - - - D E P E K R S A V R S N K R S S P E A S E E E C I S K G N M N S S D G S D I T S D D Q D N V
 
AT5G43700.1     S P P - K A Q I V G W P P V R S Y R K N N V Q T K K S E S E - G Q G N Y V K V S M D G A P Y L R K I D L T M Y K Q Y P E
pt035517_POPTR_    P A P - K A Q I V G W P P I R S Y R K N T L Q P K K A E A E A A A G M Y V K V S M D G A P Y L R K I D L K V Y K G Y P E
gm004012_Glyma0    V P P A K A Q V V G W P P V R S Y R K N S L Q Q K K E E Q A E G A G M Y V K V S M E G A P Y L R K I D L K V Y K S Y P E
 
AT5G43700.1     L M K S L E N M F K F S V G E Y F E R E G Y K G S D F V P T Y E D K D G D W M L V G D V P W E M F V S S C K R L R I M K
pt035517_POPTR_    L L K A L E N M F K L T I G E Y S E R E G Y K G S E Y A P T Y E D K D G D W M L I G D V P W D M F L S S C K K L R I I K
gm004012_Glyma0    L L K A L E N M F K C T F G Q Y S E R E G Y N G S E Y A P T Y E D K D G D W M L V G D V P W N M F V S S C K R L R I M K
 
AT5G43700.1     G S E V K G L G C G G L
pt035517_POPTR_    G S E A T G - - - - - -
gm004012_Glyma0    G S E A K G L G C F - -
 
0