fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43700.1 NLKATELRLGLPGTEE at 16/186 in AT5G43700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sm004421 not found in 202aa AT5G43700.1 1st_1st 0.349869451 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43700.1     ME-KVDVYDEL---VNLKATELRLGLPGTEE----TVSCGKSNKRVLPEATEKEIESTGK
Sm004421_Selmo1 MPLKPDSGSKPLPDLNLGETELRLGPPKSKEPAKNNVAAGEA-----PKWQHEKVEQPKS
                *  * *  .:    :**  ****** * ::*    .*:.*::     *:  .:::*.. .

AT5G43700.1     TETASPPKAQIVGWPPVRSYRKNNVQTKKSESEGQGN----------------YVKVSMD
Sm004421_Selmo1 EKSNEPDLPPVVGWPPVQSFRKNLTTTKNGVSSNTSAPAPAPAAANAATASPLFVKVYMD
                 :: .*  . :******:*:*** . **:. *.. .                 :*** **

AT5G43700.1     GAPYLRKIDLTMYKQYPELMKSLENMF-KFSVGEYFEREGYKGSDFVPTYEDKDGDWMLV
Sm004421_Selmo1 GVPIGRKVDLKANNSYDKLSTVLEDMFLRFITGK-FASFGLLSSDFVLTYEDKDGDLMLV
                *.*  **:**.  :.* :* . **:** :* .*: *   *  .**** ******** ***

AT5G43700.1     GDVPWEMFVSSCKRLRIMKGSEVKGLGCGGL
Sm004421_Selmo1 GDVPWGMFTGTVKRLRIMKGSEAIGLGK---
                ***** **..: **********. ***
BoxShade v3.31 C (beta, 970507) Output
AT5G43700.1     M E - K V D V Y D E L - - - V N L K A T E L R L G L P G T E E - - - - T V S C G K S N K R V L P E A T E K E I E S T G K
Sm004421_Selmo1    M P L K P D S G S K P L P D L N L G E T E L R L G P P K S K E P A K N N V A A G E A - - - - - P K W Q H E K V E Q P K S
 
AT5G43700.1     T E T A S P P K A Q I V G W P P V R S Y R K N N V Q T K K S E S E G Q G N - - - - - - - - - - - - - - - - Y V K V S M D
Sm004421_Selmo1    E K S N E P D L P P V V G W P P V Q S F R K N L T T T K N G V S S N T S A P A P A P A A A N A A T A S P L F V K V Y M D
 
AT5G43700.1     G A P Y L R K I D L T M Y K Q Y P E L M K S L E N M F - K F S V G E Y F E R E G Y K G S D F V P T Y E D K D G D W M L V
Sm004421_Selmo1    G V P I G R K V D L K A N N S Y D K L S T V L E D M F L R F I T G K - F A S F G L L S S D F V L T Y E D K D G D L M L V
 
AT5G43700.1     G D V P W E M F V S S C K R L R I M K G S E V K G L G C G G L
Sm004421_Selmo1    G D V P W G M F T G T V K R L R I M K G S E A I G L G K - - -
 
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