fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43700.1 NLKATELRLGLPGTEE at 16/186 in AT5G43700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035517 NLKATELRLGLPGTSC in 122/297 AT5G43700.1 1st_1st 0.647519582 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43700.1     ------------------------------------------------------------
pt035517_POPTR_ MADHVHTISYMSCCLKGAAIATDRLSLPLSIIHAFEERITRHFSQPLPFVYKIHLFPFTP
                                                                            

AT5G43700.1     ---------------------------------------------MEKVDVYDELVNLKA
pt035517_POPTR_ ASPHRKTSYHFSQESLPKEITRATSKSCIHHLLAVPVFEQRLLENMEGGVAYENDLNLKA
                                                             **   .*:: :****

AT5G43700.1     TELRLGLPGT-----EETVSCGKSNKRVLPEATEKEIESTGKT-------ETASPPKAQI
pt035517_POPTR_ TELRLGLPGTSCTNEEQAVSGARNNKRPLPE-TREERGAKGKSDPRHDDQETAPAPKAQI
                **********     *::** .:.*** *** *.:*  :.**:       ***..*****

AT5G43700.1     VGWPPVRSYRKNNVQTKKSESE-GQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENM
pt035517_POPTR_ VGWPPIRSYRKNTLQPKKAEAEAAAGMYVKVSMDGAPYLRKIDLKVYKGYPELLKALENM
                *****:******.:*.**:*:* . * *****************.:** ****:*:****

AT5G43700.1     FKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLG
pt035517_POPTR_ FKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLIGDVPWDMFLSSCKKLRIIKGSEATG--
                **:::*** ********::.************:*****:**:****:***:****..*  

AT5G43700.1     CGGL
pt035517_POPTR_ ----
BoxShade v3.31 C (beta, 970507) Output
AT5G43700.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
pt035517_POPTR_    M A D H V H T I S Y M S C C L K G A A I A T D R L S L P L S I I H A F E E R I T R H F S Q P L P F V Y K I H L F P F T P
 
AT5G43700.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M E K V D V Y D E L V N L K A
pt035517_POPTR_    A S P H R K T S Y H F S Q E S L P K E I T R A T S K S C I H H L L A V P V F E Q R L L E N M E G G V A Y E N D L N L K A
 
AT5G43700.1     T E L R L G L P G T - - - - - E E T V S C G K S N K R V L P E A T E K E I E S T G K T - - - - - - - E T A S P P K A Q I
pt035517_POPTR_    T E L R L G L P G T S C T N E E Q A V S G A R N N K R P L P E - T R E E R G A K G K S D P R H D D Q E T A P A P K A Q I
 
AT5G43700.1     V G W P P V R S Y R K N N V Q T K K S E S E - G Q G N Y V K V S M D G A P Y L R K I D L T M Y K Q Y P E L M K S L E N M
pt035517_POPTR_    V G W P P I R S Y R K N T L Q P K K A E A E A A A G M Y V K V S M D G A P Y L R K I D L K V Y K G Y P E L L K A L E N M
 
AT5G43700.1     F K F S V G E Y F E R E G Y K G S D F V P T Y E D K D G D W M L V G D V P W E M F V S S C K R L R I M K G S E V K G L G
pt035517_POPTR_    F K L T I G E Y S E R E G Y K G S E Y A P T Y E D K D G D W M L I G D V P W D M F L S S C K K L R I I K G S E A T G - -
 
AT5G43700.1     C G G L
pt035517_POPTR_    - - - -
 
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