fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43700.1 NLKATELRLGLPGTEE at 16/186 in AT5G43700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os041780 NLKATELRLGLPGTEE in 8/197 AT1G04240.1 1st_not 0.451697127 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43700.1     MEKVDVYDELVNLKATELRLGLPGTEETVSCGKS-----NKRVLPEATEKEIESTGKTET
Os041780_Os12t0 ME---------NLKATELRLGLPGTEEEAAPPPSTPRAGSKRALAGEPDQ-----AKIKP
                **         **************** .:   *     .**.*.  .::     .* :.

AT5G43700.1     ASPPKAQIVGWPPVRSYRKNNVQ----TKKSE-------SEGQ---------GNYVKVSM
Os041780_Os12t0 AAAAKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSM
                *:..***:***********. :*    *.**:       :* *         * :*****

AT5G43700.1     DGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLV
Os041780_Os12t0 DGAPYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLV
                ***********.:** * ** ::** **    *      . : ***. ******** ***

AT5G43700.1     GDVPWEMFVSSCKRLRIMKGSEVKGLGC--GGL
Os041780_Os12t0 GDVPFEMFISTCKRLRIMKGSEARGLGATRG--
                ****:***:*:***********.:***.  *
BoxShade v3.31 C (beta, 970507) Output
AT5G43700.1     M E K V D V Y D E L V N L K A T E L R L G L P G T E E T V S C G K S - - - - - N K R V L P E A T E K E I E S T G K T E T
Os041780_Os12t0    M E - - - - - - - - - N L K A T E L R L G L P G T E E E A A P P P S T P R A G S K R A L A G E P D Q - - - - - A K I K P
 
AT5G43700.1     A S P P K A Q I V G W P P V R S Y R K N N V Q - - - - T K K S E - - - - - - - S E G Q - - - - - - - - - G N Y V K V S M
Os041780_Os12t0    A A A A K A Q V V G W P P V R S Y R K S C L Q P T T T T T K S K P P P A A A A A E T Q Q K E D V A G A G G L F V K V S M
 
AT5G43700.1     D G A P Y L R K I D L T M Y K Q Y P E L M K S L E N M F K F S V G E Y F E R E G Y K G S D F V P T Y E D K D G D W M L V
Os041780_Os12t0    D G A P Y L R K I D L K V Y K G Y R E L R E A L E A M F L C F S G G A A A D A A V N P S D F A V T Y E D K D G D L M L V
 
AT5G43700.1     G D V P W E M F V S S C K R L R I M K G S E V K G L G C - - G G L
Os041780_Os12t0    G D V P F E M F I S T C K R L R I M K G S E A R G L G A T R G - -
 
0