fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43700.1 NLKATELRLGLPGTEE at 16/186 in AT5G43700.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm004012 NLEATELRLGLPGSDE in 18/202 AT5G43700.1 1st_1st 0.650130548 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43700.1     MEK-VDVYDELVNLKATELRLGLPGTE--ETVSCGKSNKRVLPEATEKEIESTGKTETAS
gm004012_Glyma0 MENSLGKYGKELNLEATELRLGLPGSDEPEKRSAVRSNKRSSPEASEEECISKGNMNSSD
                **: :. *.: :**:**********::  *. *. :****  ***:*:*  *.*: :::.

AT5G43700.1     --------------PPKAQIVGWPPVRSYRKNNVQTKKSE-SEGQGNYVKVSMDGAPYLR
gm004012_Glyma0 GSDITSDDQDNVVPPAKAQVVGWPPVRSYRKNSLQQKKEEQAEGAGMYVKVSMEGAPYLR
                              *.***:************.:* **.* :** * ******:******

AT5G43700.1     KIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEM
gm004012_Glyma0 KIDLKVYKSYPELLKALENMFKCTFGQYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNM
                ****.:**.****:*:****** :.*:* *****:**::.******************:*

AT5G43700.1     FVSSCKRLRIMKGSEVKGLGCGGL
gm004012_Glyma0 FVSSCKRLRIMKGSEAKGLGCF--
                ***************.*****
BoxShade v3.31 C (beta, 970507) Output
AT5G43700.1     M E K - V D V Y D E L V N L K A T E L R L G L P G T E - - E T V S C G K S N K R V L P E A T E K E I E S T G K T E T A S
gm004012_Glyma0    M E N S L G K Y G K E L N L E A T E L R L G L P G S D E P E K R S A V R S N K R S S P E A S E E E C I S K G N M N S S D
 
AT5G43700.1     - - - - - - - - - - - - - - P P K A Q I V G W P P V R S Y R K N N V Q T K K S E - S E G Q G N Y V K V S M D G A P Y L R
gm004012_Glyma0    G S D I T S D D Q D N V V P P A K A Q V V G W P P V R S Y R K N S L Q Q K K E E Q A E G A G M Y V K V S M E G A P Y L R
 
AT5G43700.1     K I D L T M Y K Q Y P E L M K S L E N M F K F S V G E Y F E R E G Y K G S D F V P T Y E D K D G D W M L V G D V P W E M
gm004012_Glyma0    K I D L K V Y K S Y P E L L K A L E N M F K C T F G Q Y S E R E G Y N G S E Y A P T Y E D K D G D W M L V G D V P W N M
 
AT5G43700.1     F V S S C K R L R I M K G S E V K G L G C G G L
gm004012_Glyma0    F V S S C K R L R I M K G S E A K G L G C F - -
 
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