fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G43840.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt035084 not found in 358aa AT3G22830.1 not_not 0.402777777 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G43840.1     ------------------------MDYNLPIPLEGLKETPPTAFLTKTYNIVEDSSTNNI
pt035084_POPTR_ MNRRGRAIKEEYAGGSSSTYSSGMASTAIPQPMEGLHDPGPPPFLTKTYDIIEDSSTNHI
                                         .  :* *:***::. *..******:*:******:*

AT5G43840.1     VSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFL
pt035084_POPTR_ ISWSRGNNSFVVWDPQAFSISLLPRYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFL
                :****.****:**:*::*::  *** ******************:*:*.:******* **

AT5G43840.1     KGERHLLKNIKRRKT-SSQTQTQSLE-----------GEIHELRRDRMALEVELVRLRRK
pt035084_POPTR_ RGKKHLLKTVRRRKAPQTQTSQQALEACVEVGTFRLDGEVDRLSRDKQVLMVELVKLRQQ
                :*::****.::***: .:**. *:**           **:..* **: .* ****:**::

AT5G43840.1     QESVKTYLHLMEEKLKVTEVKQEMMMNFLLKKIKKPSFLQSL-----------------R
pt035084_POPTR_ QQTTRACLQLMEQRVKRNENKQQHMMSFLARAMQNPTFVQQLVQQKDMMKELEEEISKKK
                *::.:: *:***:::* .* **: **.** : :::*:*:*.*                 :

AT5G43840.1     KRNL-QGIKNREQKQEVISSHGVEDNGKFVKAEPEEYGD---------------------
pt035084_POPTR_ RRPIDQGRNNVEVGE---FGHG-EGVGTFVKIEPREFGGFSEFEVPEFVNLAMNMQELNE
                :* : ** :* *  :    .** *. *.*** **.*:*.                     

AT5G43840.1     ----DIDDQCGGVFDYGDELHIASMEHQGQGEDEIEMDSEGIWKGFV--------LSEEE
pt035084_POPTR_ NQLINLDEEC---IEKGEE-----YENNGKDFD------EAFWEDLLNEDIGEQGEDEED
                    ::*::*   :: *:*      *::*:. *      *.:*:.::         .**:

AT5G43840.1     MCDLVEHFI-------
pt035084_POPTR_ VNVLVEQLGYLGYSPK
                :  ***::
BoxShade v3.31 C (beta, 970507) Output
AT5G43840.1     - - - - - - - - - - - - - - - - - - - - - - - - M D Y N L P I P L E G L K E T P P T A F L T K T Y N I V E D S S T N N I
pt035084_POPTR_    M N R R G R A I K E E Y A G G S S S T Y S S G M A S T A I P Q P M E G L H D P G P P P F L T K T Y D I I E D S S T N H I
 
AT5G43840.1     V S W S R D N N S F I V W E P E T F A L I C L P R C F K H N N F S S F V R Q L N T Y G F K K I D T E R W E F A N E H F L
pt035084_POPTR_    I S W S R G N N S F V V W D P Q A F S I S L L P R Y F K H N N F S S F V R Q L N T Y G F R K V D P D R W E F A N E G F L
 
AT5G43840.1     K G E R H L L K N I K R R K T - S S Q T Q T Q S L E - - - - - - - - - - - G E I H E L R R D R M A L E V E L V R L R R K
pt035084_POPTR_    R G K K H L L K T V R R R K A P Q T Q T S Q Q A L E A C V E V G T F R L D G E V D R L S R D K Q V L M V E L V K L R Q Q
 
AT5G43840.1     Q E S V K T Y L H L M E E K L K V T E V K Q E M M M N F L L K K I K K P S F L Q S L - - - - - - - - - - - - - - - - - R
pt035084_POPTR_    Q Q T T R A C L Q L M E Q R V K R N E N K Q Q H M M S F L A R A M Q N P T F V Q Q L V Q Q K D M M K E L E E E I S K K K
 
AT5G43840.1     K R N L - Q G I K N R E Q K Q E V I S S H G V E D N G K F V K A E P E E Y G D - - - - - - - - - - - - - - - - - - - - -
pt035084_POPTR_    R R P I D Q G R N N V E V G E - - - F G H G - E G V G T F V K I E P R E F G G F S E F E V P E F V N L A M N M Q E L N E
 
AT5G43840.1     - - - - D I D D Q C G G V F D Y G D E L H I A S M E H Q G Q G E D E I E M D S E G I W K G F V - - - - - - - - L S E E E
pt035084_POPTR_    N Q L I N L D E E C - - - I E K G E E - - - - - Y E N N G K D F D - - - - - - E A F W E D L L N E D I G E Q G E D E E D
 
AT5G43840.1     M C D L V E H F I - - - - - - -
pt035084_POPTR_    V N V L V E Q L G Y L G Y S P K
 
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