fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G44210.1 VEPRRELNLDLNLAPP at 185/200 in AT5G44210.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt004210 PRRSVLDLDLNLPPPLDA in 201/213 AT5G44210.1 1st_1st 0.360230547 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G44210.1     MAPRQANGRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLG
pt004210_POPTR_ MAPKKLNA-----SNSGCFKKASGDHDKKEIHYRGVRKRPWGRYAAEIRDPGKKSRVWLG
                ***:: *.     *:.*  *. :    :**:*:*********************:*****

AT5G44210.1     TFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDGGENDSYVNRTTVTTARE---
pt004210_POPTR_ TFDTAEEAAKAYDKAAREYRGAKAKTNFPFSGEVVNYDDDKQSSSH--SSTVESSSSPVV
                *********:***.****:**:*******:.** .. :*. :..*:   :** :: .   

AT5G44210.1     ---MTRQ-------------RFPFACHRERKVVGGYASAGFFFDPSRAASLRAE-LSRVC
pt004210_POPTR_ SAAVTRQVGGGGVGGVVGMGGFPFVYQQQQQNVNVVAPV-WFFD-----SVRPEFVTQRF
                   :***              ***. ::::: *.  *.. :***     *:*.* :::  

AT5G44210.1     PVRFDPVNIELSIGIR------ETVKVEPRRE-LNLDLNLAPPVVDV
pt004210_POPTR_ PVRFDQVGLESAGGAQSDSDSSSMVDCQPRRSVLDLDLNLPPP-LDA
                ***** *.:* : * :      . *. :***. *:*****.** :*.
BoxShade v3.31 C (beta, 970507) Output
AT5G44210.1     M A P R Q A N G R S I A V S E G G G G K T M T M T T M R K E V H F R G V R K R P W G R Y A A E I R D P G K K T R V W L G
pt004210_POPTR_    M A P K K L N A - - - - - S N S G C F K K A S G D H D K K E I H Y R G V R K R P W G R Y A A E I R D P G K K S R V W L G
 
AT5G44210.1     T F D T A E E A A R A Y D T A A R E F R G S K A K T N F P L P G E S T T V N D G G E N D S Y V N R T T V T T A R E - - -
pt004210_POPTR_    T F D T A E E A A K A Y D K A A R E Y R G A K A K T N F P F S G E V V N Y D D D K Q S S S H - - S S T V E S S S S P V V
 
AT5G44210.1     - - - M T R Q - - - - - - - - - - - - - R F P F A C H R E R K V V G G Y A S A G F F F D P S R A A S L R A E - L S R V C
pt004210_POPTR_    S A A V T R Q V G G G G V G G V V G M G G F P F V Y Q Q Q Q Q N V N V V A P V - W F F D - - - - - S V R P E F V T Q R F
 
AT5G44210.1     P V R F D P V N I E L S I G I R - - - - - - E T V K V E P R R E - L N L D L N L A P P V V D V
pt004210_POPTR_    P V R F D Q V G L E S A G G A Q S D S D S S S M V D C Q P R R S V L D L D L N L P P P - L D A
 
0