fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47220.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt009912 not found in 280aa AT4G17500.1 1st_not 0.477722772 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47220.1     MYGQCNIES-DYALLESITRHLLGGGGEN----------ELRLNESTPSS----------
pt009912_POPTR_ MYGQSLLDQPDYAFLDPVRLHLQGETVSTAPTTTCSYTPAITTTTAAPAANYTPPLVYCR
                ****. ::. ***:*:.:  ** *   ..           :  . ::*::          

AT5G47220.1     ---------CFTESWGGLPLKENDSEDMLVYGLLKDAFHFD---TSSSDLSCLFDFPAVK
pt009912_POPTR_ STSFSSLYPCLTENWGDLPLKVDDSEDMFLYAVLRDAVTVGWVPSLKTDQLVQPNFPLVK
                         *:**.**.**** :*****::*.:*:**. ..   : .:*     :** **

AT5G47220.1     VEPTENFTAMEEKPKKAIPVTETAV---KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWL
pt009912_POPTR_ LEPTENLAV--SPPSTAVPVAEPAVLPSKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWL
                :*****::.  . *..*:**:*.**   *.******************************

AT5G47220.1     GTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTS
pt009912_POPTR_ GTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRSSPEPSSSVDS--
                ************** **:************************:******...*** .*  

AT5G47220.1     SSENGKLKRRRKAENL--TSEVVQ---------VKCEVGDETRVDELLVS
pt009912_POPTR_ ----GSPKRRKKVGGTAGAATVVAKAGLEIGNGVGCQVG--THGEQMLVI
                    *. ***:*. .   :: **          * *:**  *: :::**
BoxShade v3.31 C (beta, 970507) Output
AT5G47220.1     M Y G Q C N I E S - D Y A L L E S I T R H L L G G G G E N - - - - - - - - - - E L R L N E S T P S S - - - - - - - - - -
pt009912_POPTR_    M Y G Q S L L D Q P D Y A F L D P V R L H L Q G E T V S T A P T T T C S Y T P A I T T T T A A P A A N Y T P P L V Y C R
 
AT5G47220.1     - - - - - - - - - C F T E S W G G L P L K E N D S E D M L V Y G L L K D A F H F D - - - T S S S D L S C L F D F P A V K
pt009912_POPTR_    S T S F S S L Y P C L T E N W G D L P L K V D D S E D M F L Y A V L R D A V T V G W V P S L K T D Q L V Q P N F P L V K
 
AT5G47220.1     V E P T E N F T A M E E K P K K A I P V T E T A V - - - K A K H Y R G V R Q R P W G K F A A E I R D P A K N G A R V W L
pt009912_POPTR_    L E P T E N L A V - - S P P S T A V P V A E P A V L P S K G K H Y R G V R Q R P W G K F A A E I R D P A K N G A R V W L
 
AT5G47220.1     G T F E T A E D A A L A Y D I A A F R M R G S R A L L N F P L R V N S G E P D P V R I T S K R S S S S S S S S S S S T S
pt009912_POPTR_    G T F E T A E D A A L A Y D R A A Y R M R G S R A L L N F P L R V N S G E P D P V R V T S K R S S P E P S S S V D S - -
 
AT5G47220.1     S S E N G K L K R R R K A E N L - - T S E V V Q - - - - - - - - - V K C E V G D E T R V D E L L V S
pt009912_POPTR_    - - - - G S P K R R K K V G G T A G A A T V V A K A G L E I G N G V G C Q V G - - T H G E Q M L V I
 
0