fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47390.1 PNRGVKLFGVRLTEG at 23/365 in AT5G47390.1
GESDQSLSLKLGGGSS at 330/365 in AT5G47390.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp035789 PDRGVRLFGVRLTDG in 24/341 AT5G47390.1 not_1st 0.401818181 II
TKEMSQLNLGLPTPEP in 296/341
SQLTLKLLDQPS in 308/341
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47390.1     MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSN
pp035789_Pp1s18 MARGCSHCGHNGHNSRTCPDRGVRLFGVRLTDGVMRKSVSMGNLSHY---------IGPN
                *:* ****.**********:***:*******:* :***.********          *.*

AT5G47390.1     TPGSPGDVPDH----VAGDGYASEDFVAGSSSSRERKKGTPWTEEEHRMFLLGLQKLGKG
pp035789_Pp1s18 NPPSP---PSHSESGAGGDGYVSDGLVQTSNNTRERKKGVPWTEEEHRLFLLGLQKLGKG
                .* **   *.*    ..****.*:.:*  *..:******.********:***********

AT5G47390.1     DWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEPE
pp035789_Pp1s18 DWRGISRNFVQTRTPTQVASHAQKYFIRQSNMNKRKRRSSLFDIV-SETGPAPI-LEEPA
                ********:* ********************:.:*********:* .*.*  *: *:** 

AT5G47390.1     EDNIPVETEMQGADSIHQ-TLAPSSLHAPSILEIEECESMDSTN------------STTG
pp035789_Pp1s18 TKS---ASDM--AAPMHQLSLGPNSMY-PGIF-------YDANNPHGYVRPYMLPPTSMA
                 ..    ::*  * .:** :*.*.*:: *.*:        *:.*            :: .

AT5G47390.1     EPTATAAAAS--SSSRLEETTQLQSQLQPQPQLPGSFPILYPTYFSPYYPFP-FPIWPAG
pp035789_Pp1s18 VPIMSIGPVSLGASEQIPETSAVNFS---GPN--GAMGI--------SYPFPMFSMMPRG
                 *  : ...*  :*.:: **: :: .    *:  *:: *         **** *.: * *

AT5G47390.1     YVPEPPKKEETHEILRPTAVHSKAPIN--VDELLGMSKLSLAESNKHGESDQSLSLKLGG
pp035789_Pp1s18 Y--NRPVNSVDSKVLRPTAKLSTEPLNVGVNETKEMSQLNLGLPTP--EPSQ-LTLKLLD
                *  : * :.   ::*****  *. *:*  *:*   **:*.*. ..   *..* *:*** .

AT5G47390.1     GSSSRQSAFHPNPSSDSSDIKSVIHAL
pp035789_Pp1s18 QPSRSSSAFHVSTSSISSSGNAIGVV-
                 .*  .**** ..** **. :::  .
BoxShade v3.31 C (beta, 970507) Output
AT5G47390.1     M T R R C S H C N H N G H N S R T C P N R G V K L F G V R L T E G S I R K S A S M G N L S H Y T G S G S G G H G T G S N
pp035789_Pp1s18    M A R G C S H C G H N G H N S R T C P D R G V R L F G V R L T D G V M R K S V S M G N L S H Y - - - - - - - - - I G P N
 
AT5G47390.1     T P G S P G D V P D H - - - - V A G D G Y A S E D F V A G S S S S R E R K K G T P W T E E E H R M F L L G L Q K L G K G
pp035789_Pp1s18    N P P S P - - - P S H S E S G A G G D G Y V S D G L V Q T S N N T R E R K K G V P W T E E E H R L F L L G L Q K L G K G
 
AT5G47390.1     D W R G I S R N Y V T T R T P T Q V A S H A Q K Y F I R Q S N V S R R K R R S S L F D M V P D E V G D I P M D L Q E P E
pp035789_Pp1s18    D W R G I S R N F V Q T R T P T Q V A S H A Q K Y F I R Q S N M N K R K R R S S L F D I V - S E T G P A P I - L E E P A
 
AT5G47390.1     E D N I P V E T E M Q G A D S I H Q - T L A P S S L H A P S I L E I E E C E S M D S T N - - - - - - - - - - - - S T T G
pp035789_Pp1s18    T K S - - - A S D M - - A A P M H Q L S L G P N S M Y - P G I F - - - - - - - Y D A N N P H G Y V R P Y M L P P T S M A
 
AT5G47390.1     E P T A T A A A A S - - S S S R L E E T T Q L Q S Q L Q P Q P Q L P G S F P I L Y P T Y F S P Y Y P F P - F P I W P A G
pp035789_Pp1s18    V P I M S I G P V S L G A S E Q I P E T S A V N F S - - - G P N - - G A M G I - - - - - - - - S Y P F P M F S M M P R G
 
AT5G47390.1     Y V P E P P K K E E T H E I L R P T A V H S K A P I N - - V D E L L G M S K L S L A E S N K H G E S D Q S L S L K L G G
pp035789_Pp1s18    Y - - N R P V N S V D S K V L R P T A K L S T E P L N V G V N E T K E M S Q L N L G L P T P - - E P S Q - L T L K L L D
 
AT5G47390.1     G S S S R Q S A F H P N P S S D S S D I K S V I H A L
pp035789_Pp1s18    Q P S R S S S A F H V S T S S I S S S G N A I G V V -
 
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