fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47390.1 PNRGVKLFGVRLTEG at 23/365 in AT5G47390.1
GESDQSLSLKLGGGSS at 330/365 in AT5G47390.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pp024115 PDRGVRLFGVRLTDG in 24/356 AT5G47390.1 1st_1st 0.407272727 Ia
TKDMSQLNLGLSTPEP in 311/356
SQLTLKLLDQPS in 323/356
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47390.1     MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSN
pp024115_Pp1s70 MARGCSHCGHNGHNSRTCPDRGVRLFGVRLTDGVMRKSVSMGNLSHY---------ASPN
                *:* ****.**********:***:*******:* :***.********         :..*

AT5G47390.1     TPGSPGDVPDH----VAGDGYASEDFVAGSSSSRERKKGTPWTEEEHRMFLLGLQKLGKG
pp024115_Pp1s70 NPSSP---PSHSESGAGGDGYVSDGLVQTSNNTRERKKGVPWTEEEHRLFLLGLQKLGKG
                .*.**   *.*    ..****.*:.:*  *..:******.********:***********

AT5G47390.1     DWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEPE
pp024115_Pp1s70 DWRGISRNFVQTRTPTQVASHAQKYFIRQSNINKRKRRSSLFDIV-SETGPTPI-LEEPT
                ********:* ********************:.:*********:* .*.*  *: *:** 

AT5G47390.1     EDNIPVETEMQGADSIHQ-TLAPSSLHAPSILEIEECESMDSTNSTTG-------EPTAT
pp024115_Pp1s70 TKAVP---DMSA--PLHQLSLGPNSTY-PGVFY--------DPNSSHGFIRPFMLPPTSL
                 . :*   :*..  .:** :*.*.* : *.::         ..**: *        **: 

AT5G47390.1     A--------AAASSSSRLEETTQLQ-SQLQPQPQLPGSFPILYPT-YFSPYYPFP-FPIW
pp024115_Pp1s70 AVPIMSMGPVALGASEQIPETSAVNFNGDAARAMRPMGIPVSGPSGAMGIPYPFPMFSML
                *        .* .:*.:: **: :: .   .:.  * .:*:  *:  :.  **** *.: 

AT5G47390.1     PAGYVPEPPKKEETHEILRPTAVHSKAPIN--VDELLGMSKLSLAESNKHGESDQSLSLK
pp024115_Pp1s70 PRGY--NRPVNSADSKVLRPTAKLSTEPLNVGVDETKDMSQLNLGLSTP--EPSQ-LTLK
                * **  : * :.   ::*****  *. *:*  ***  .**:*.*. *.   *..* *:**

AT5G47390.1     LGGGSSSRQSAFHPNPSS--DSSDIKSVIHAL
pp024115_Pp1s70 LLDQPSRSSSAFHVSTSSINSSSNAIGVV---
                * . .*  .**** ..**  .**:  .*:
BoxShade v3.31 C (beta, 970507) Output
AT5G47390.1     M T R R C S H C N H N G H N S R T C P N R G V K L F G V R L T E G S I R K S A S M G N L S H Y T G S G S G G H G T G S N
pp024115_Pp1s70    M A R G C S H C G H N G H N S R T C P D R G V R L F G V R L T D G V M R K S V S M G N L S H Y - - - - - - - - - A S P N
 
AT5G47390.1     T P G S P G D V P D H - - - - V A G D G Y A S E D F V A G S S S S R E R K K G T P W T E E E H R M F L L G L Q K L G K G
pp024115_Pp1s70    N P S S P - - - P S H S E S G A G G D G Y V S D G L V Q T S N N T R E R K K G V P W T E E E H R L F L L G L Q K L G K G
 
AT5G47390.1     D W R G I S R N Y V T T R T P T Q V A S H A Q K Y F I R Q S N V S R R K R R S S L F D M V P D E V G D I P M D L Q E P E
pp024115_Pp1s70    D W R G I S R N F V Q T R T P T Q V A S H A Q K Y F I R Q S N I N K R K R R S S L F D I V - S E T G P T P I - L E E P T
 
AT5G47390.1     E D N I P V E T E M Q G A D S I H Q - T L A P S S L H A P S I L E I E E C E S M D S T N S T T G - - - - - - - E P T A T
pp024115_Pp1s70    T K A V P - - - D M S A - - P L H Q L S L G P N S T Y - P G V F Y - - - - - - - - D P N S S H G F I R P F M L P P T S L
 
AT5G47390.1     A - - - - - - - - A A A S S S S R L E E T T Q L Q - S Q L Q P Q P Q L P G S F P I L Y P T - Y F S P Y Y P F P - F P I W
pp024115_Pp1s70    A V P I M S M G P V A L G A S E Q I P E T S A V N F N G D A A R A M R P M G I P V S G P S G A M G I P Y P F P M F S M L
 
AT5G47390.1     P A G Y V P E P P K K E E T H E I L R P T A V H S K A P I N - - V D E L L G M S K L S L A E S N K H G E S D Q S L S L K
pp024115_Pp1s70    P R G Y - - N R P V N S A D S K V L R P T A K L S T E P L N V G V D E T K D M S Q L N L G L S T P - - E P S Q - L T L K
 
AT5G47390.1     L G G G S S S R Q S A F H P N P S S - - D S S D I K S V I H A L
pp024115_Pp1s70    L L D Q P S R S S S A F H V S T S S I N S S S N A I G V V - - -
 
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