fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47390.1 PNRGVKLFGVRLTEG at 23/365 in AT5G47390.1
GESDQSLSLKLGGGSS at 330/365 in AT5G47390.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt030720 PNRVVKLFGVRLTDG in 24/337 AT5G47390.1 not_1st 0.598181818 II
DDGSSSLSLKLLEGPS in 301/337
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47390.1     MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGS--GGHGTG
pt030720_POPTR_ MTRRCSHCSHNGHNSRTCPNRVVKLFGVRLTDGSIRKSASMGNLSLYTGSSNMGGPHASG
                ********.************ *********:************* ****..  * *.:*

AT5G47390.1     SNTPGSPGDVPDH---VAGDGYASEDFVAGSSSSRERKKGTPWTEEEHRMFLLGLQKLGK
pt030720_POPTR_ SNNPGSPSDTPDHGAAAAADGYASEDFVPGSSSSRERKKGVPWTEEEHRMFLLGLQKLGK
                **.****.*.***   .*.*********.***********.*******************

AT5G47390.1     GDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEP
pt030720_POPTR_ GDWRGIARNYVISRSPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEQLDTPMVSQDF
                ******:**** :*:*****************************:*.**  * **  *: 

AT5G47390.1     EEDNIP-VETEMQGADSIHQTLAPSSLHAPSILEIEECESMDSTNSTTGEPTATAAAASS
pt030720_POPTR_ LSTNHPRVDT---------QTDNP--LPAPPPLD-EECESMDSTNSNEGEP---------
                 . * * *:*         **  *  * **. *: ***********. ***         

AT5G47390.1     SSRLEETTQLQSQLQPQP--QLPGSFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEETH
pt030720_POPTR_ -------------LPPKPDSSQP-AYPVVYPAYLSPFFPCSFPFW-SGCSAE-PSKTETH
                             * *:*  . * ::*::**:*:**::* .**:* :*  .* *.* ***

AT5G47390.1     EILRPTAVHSKAPINVDELLGMSKLSLAES-NKHGESDQSLSLKLGGGSSSRQSAFHPNP
pt030720_POPTR_ EVLKPTAVHSKSPINVDELVGMSKLSIGESIGDDGSS--SLSLKLLEG-PSRQSAFHANP
                *:*:*******:*******:******:.** ...*.*  ******  * .*******.**

AT5G47390.1     SSDSSDIK---SVIHAL
pt030720_POPTR_ ASNSSGINRSSSPIHAV
                :*:**.*:   * ***:
BoxShade v3.31 C (beta, 970507) Output
AT5G47390.1     M T R R C S H C N H N G H N S R T C P N R G V K L F G V R L T E G S I R K S A S M G N L S H Y T G S G S - - G G H G T G
pt030720_POPTR_    M T R R C S H C S H N G H N S R T C P N R V V K L F G V R L T D G S I R K S A S M G N L S L Y T G S S N M G G P H A S G
 
AT5G47390.1     S N T P G S P G D V P D H - - - V A G D G Y A S E D F V A G S S S S R E R K K G T P W T E E E H R M F L L G L Q K L G K
pt030720_POPTR_    S N N P G S P S D T P D H G A A A A A D G Y A S E D F V P G S S S S R E R K K G V P W T E E E H R M F L L G L Q K L G K
 
AT5G47390.1     G D W R G I S R N Y V T T R T P T Q V A S H A Q K Y F I R Q S N V S R R K R R S S L F D M V P D E V G D I P M D L Q E P
pt030720_POPTR_    G D W R G I A R N Y V I S R S P T Q V A S H A Q K Y F I R Q S N V S R R K R R S S L F D I V A D E Q L D T P M V S Q D F
 
AT5G47390.1     E E D N I P - V E T E M Q G A D S I H Q T L A P S S L H A P S I L E I E E C E S M D S T N S T T G E P T A T A A A A S S
pt030720_POPTR_    L S T N H P R V D T - - - - - - - - - Q T D N P - - L P A P P P L D - E E C E S M D S T N S N E G E P - - - - - - - - -
 
AT5G47390.1     S S R L E E T T Q L Q S Q L Q P Q P - - Q L P G S F P I L Y P T Y F S P Y Y P F P F P I W P A G Y V P E P P K K E E T H
pt030720_POPTR_    - - - - - - - - - - - - - L P P K P D S S Q P - A Y P V V Y P A Y L S P F F P C S F P F W - S G C S A E - P S K T E T H
 
AT5G47390.1     E I L R P T A V H S K A P I N V D E L L G M S K L S L A E S - N K H G E S D Q S L S L K L G G G S S S R Q S A F H P N P
pt030720_POPTR_    E V L K P T A V H S K S P I N V D E L V G M S K L S I G E S I G D D G S S - - S L S L K L L E G - P S R Q S A F H A N P
 
AT5G47390.1     S S D S S D I K - - - S V I H A L
pt030720_POPTR_    A S N S S G I N R S S S P I H A V
 
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