fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47390.1 PNRGVKLFGVRLTEG at 23/365 in AT5G47390.1
GESDQSLSLKLGGGSS at 330/365 in AT5G47390.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb024608 SGGGVRLFGVRLTTA in 73/407 AT3G16350.1 not_not 0.409090909 III
SMEPTALSLQLIGSTD in 369/407
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47390.1     ----------------------------------------------MTRRCSHCNHNGHN
Sb024608_Sorbi1 GKKREGEGGEQPRAHGVAFGTLAARRTYEPVASARVARTRASPPERMTRRCSHCSNNGHN
                                                              ********.:****

AT5G47390.1     SRTCPNR---GVKLFGVRLTE----GSIRKSASMGNLSHYTGSGSGGH-----GTGSNTP
Sb024608_Sorbi1 SRTCPARSGGGVRLFGVRLTTAPAPAAMKKSASMSCIASSLGGGSGGSSPPAGGVGGGRG
                ***** *   **:*******     .:::*****. ::   *.****      *.*..  

AT5G47390.1     GSPGDVPDHVAGDGYASEDFVAGSSSSR---ERKKGTPWTEEEHRMFLLGLQKLGKGDWR
Sb024608_Sorbi1 GGDG-------GAGYVSDDPGHASCSTNGRVERKKGTPWTEEEHRMFLMGLQKLGKGDWR
                *. *       * **.*:*   .*.*:.   *****************:***********

AT5G47390.1     GISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEPEEDN
Sb024608_Sorbi1 GISRNFVVSRTPTQVASHAQKYFIRQTNSSRRKRRSSLFDM----VAEMPVDESLAAAEQ
                *****:*.:*****************:* ************    *.::*:* . .  ::

AT5G47390.1     IPVETEMQGADSIHQTLAPSSLHAPSILEIEECESMDSTNSTTGEPTATAAAASSSSRLE
Sb024608_Sorbi1 ITIQNTQDEAASSNQL---PTLHLGHQKEAEFAKQMPTFQLRQHEESEYAEPSLTLPDLE
                *.::.  : * * :*    .:**     * * .:.* : :    * :  * .: : . **

AT5G47390.1     ETTQLQSQLQPQPQLPGSFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEE---THEILR
Sb024608_Sorbi1 MNSSVPFNTIAVPTMPAFYPALVPV--------PLTLWP----PSVAHVEDAGTTHEILK
                 .:.:  :  . * :*. :* * *.        *:.:**    *. .: *:   *****:

AT5G47390.1     PTAVHSKAPINVDELLGMSKLSLAESNKHGESDQSLSLKLGGGSSSRQSAFHPNPSSDSS
Sb024608_Sorbi1 PTPLNGKEVIKADDVVGMSKLSIGEASSGSMEPTALSLQLIGSTDTRQSAFHVSPPMNRP
                **.::.*  *:.*:::******:.*:.. . .  :***:* *.:.:****** .*. : .

AT5G47390.1     DI----KSVIHAL
Sb024608_Sorbi1 ELSKRNSSPIHAV
                ::    .* ***:
BoxShade v3.31 C (beta, 970507) Output
AT5G47390.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - M T R R C S H C N H N G H N
Sb024608_Sorbi1    G K K R E G E G G E Q P R A H G V A F G T L A A R R T Y E P V A S A R V A R T R A S P P E R M T R R C S H C S N N G H N
 
AT5G47390.1     S R T C P N R - - - G V K L F G V R L T E - - - - G S I R K S A S M G N L S H Y T G S G S G G H - - - - - G T G S N T P
Sb024608_Sorbi1    S R T C P A R S G G G V R L F G V R L T T A P A P A A M K K S A S M S C I A S S L G G G S G G S S P P A G G V G G G R G
 
AT5G47390.1     G S P G D V P D H V A G D G Y A S E D F V A G S S S S R - - - E R K K G T P W T E E E H R M F L L G L Q K L G K G D W R
Sb024608_Sorbi1    G G D G - - - - - - - G A G Y V S D D P G H A S C S T N G R V E R K K G T P W T E E E H R M F L M G L Q K L G K G D W R
 
AT5G47390.1     G I S R N Y V T T R T P T Q V A S H A Q K Y F I R Q S N V S R R K R R S S L F D M V P D E V G D I P M D L Q E P E E D N
Sb024608_Sorbi1    G I S R N F V V S R T P T Q V A S H A Q K Y F I R Q T N S S R R K R R S S L F D M - - - - V A E M P V D E S L A A A E Q
 
AT5G47390.1     I P V E T E M Q G A D S I H Q T L A P S S L H A P S I L E I E E C E S M D S T N S T T G E P T A T A A A A S S S S R L E
Sb024608_Sorbi1    I T I Q N T Q D E A A S S N Q L - - - P T L H L G H Q K E A E F A K Q M P T F Q L R Q H E E S E Y A E P S L T L P D L E
 
AT5G47390.1     E T T Q L Q S Q L Q P Q P Q L P G S F P I L Y P T Y F S P Y Y P F P F P I W P A G Y V P E P P K K E E - - - T H E I L R
Sb024608_Sorbi1    M N S S V P F N T I A V P T M P A F Y P A L V P V - - - - - - - - P L T L W P - - - - P S V A H V E D A G T T H E I L K
 
AT5G47390.1     P T A V H S K A P I N V D E L L G M S K L S L A E S N K H G E S D Q S L S L K L G G G S S S R Q S A F H P N P S S D S S
Sb024608_Sorbi1    P T P L N G K E V I K A D D V V G M S K L S I G E A S S G S M E P T A L S L Q L I G S T D T R Q S A F H V S P P M N R P
 
AT5G47390.1     D I - - - - K S V I H A L
Sb024608_Sorbi1    E L S K R N S S P I H A V
 
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