fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47390.1 PNRGVKLFGVRLTEG at 23/365 in AT5G47390.1
GESDQSLSLKLGGGSS at 330/365 in AT5G47390.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm038242 GGGGVKLFGVRLTDG in 27/356 AT3G16350.1 not_not 0.42 III
GKSQPSLNLSLKSEFE in 208/356
Gm040883 GGGGVKLFGVRLTDG in 27/360 AT3G16350.1 not_not 0.414545454 III
GKSQPSLNLSLKSEFE in 212/360
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G47390.1     MTRRCSHCNHNGHNSRTCPNR---GVKLFGVRLTEGS-IRKSASMGNLSHYT--GSGSGG
gm040883_Glyma1 MTRRCSHCTNNGHNSRTCPSRGGGGVKLFGVRLTDGSIIKKSASMGNLNLSSSSSSAAAA
gm038242_Glyma1 MTRRCSHCSNNGHNSRTCPSRGGGGVKLFGVRLTDGSIIKKSASMGNLNLSS-----AAA
                ********.:*********.*   **********:** *:********.  :     :..

AT5G47390.1     HGT--------------GSNTPGSPGDVPDHVAGDGYASED--FVAGSSSSR-ERKKGTP
gm040883_Glyma1 HLQFRSSPSSSNLPAA-SSPNPSSPCSDPPQ----GYLSDDPAHVSTFANRRGDRKKGVP
gm038242_Glyma1 HHQFHSSPSSSNLAAAPSSPNPSSPCSDPPQ----GYLSDDPAHVSTFANRRGDRKKGVP
                *                .* .*.** . * :    ** *:*  .*:  :. * :****.*

AT5G47390.1     WTEEEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSL
gm040883_Glyma1 WTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSL
gm038242_Glyma1 WTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSL
                *******:**:*************:**:*.:******************:.:********

AT5G47390.1     FDMVPDEVGDIPMDLQEPEEDNIPVETEMQGADSIHQTLAPSSLHAPSILEIEECESMDS
gm040883_Glyma1 FDMVPDMSSDQP---SVPEE----------------QVLLPPPENS------QPCNG---
gm038242_Glyma1 FDMVPDMSSDQP---SVPEE----------------QVLLPPSQNS------QPCNG---
                ******  .* *   . ***                *.* *.. ::      : *:.   

AT5G47390.1     TNSTTGEPTATAAAASSSSRLEETTQLQSQLQPQPQLPGSF---PILYPTYFSPYYPFPF
gm040883_Glyma1 ----KSQPSLNLSLKSEFEPMETTSQENVQQTNEPMM-GSNRLTPMAPHGCFPAYLPVPF
gm038242_Glyma1 ----KSQPSLNLSLKSEFEPMETTSQENAQQTNETMM-GSIGLTPMAPHGFFPAYLPVPF
                    ..:*: . :  *. . :* *:* : *   :. : **    *:     *..* *.**

AT5G47390.1     PIWPAGYVP--EPPKKEET--HEILRPTAVHSKAPINVDELLGMSKLSLAESNKHGESDQ
gm040883_Glyma1 PVWPSTWVHPFEEVKGGETCHHQIHKPIPVIPKEPVNVDELVGMSHLSIGEAQVRDREPS
gm038242_Glyma1 PMWPSTVAPPFEEVKGGETSHHQIHKPIPVIPKEPVNVDELVGMSHLSIGEAKVRDREPS
                *:**:  .   *  *  **  *:* :* .* .* *:*****:***:**:.*:: :... .

AT5G47390.1     SLSLKLGGGSSSRQSAFHPNPSSDSSDIK----SVIHAL
gm040883_Glyma1 PLSIKL-LGEPSRQSAFHANVPVGSSDLNNGKDNAIQAV
gm038242_Glyma1 PLSLKL-LGEPSRQSAFHANAPVGTSDLNNGKDNAIQAV
                .**:**  *..*******.* . .:**::    ..*:*:
BoxShade v3.31 C (beta, 970507) Output
AT5G47390.1     M T R R C S H C N H N G H N S R T C P N R - - - G V K L F G V R L T E G S - I R K S A S M G N L S H Y T - - G S G S G G
gm040883_Glyma1    M T R R C S H C T N N G H N S R T C P S R G G G G V K L F G V R L T D G S I I K K S A S M G N L N L S S S S S S A A A A
gm038242_Glyma1    M T R R C S H C S N N G H N S R T C P S R G G G G V K L F G V R L T D G S I I K K S A S M G N L N L S S - - - - - A A A
 
AT5G47390.1     H G T - - - - - - - - - - - - - - G S N T P G S P G D V P D H V A G D G Y A S E D - - F V A G S S S S R - E R K K G T P
gm040883_Glyma1    H L Q F R S S P S S S N L P A A - S S P N P S S P C S D P P Q - - - - G Y L S D D P A H V S T F A N R R G D R K K G V P
gm038242_Glyma1    H H Q F H S S P S S S N L A A A P S S P N P S S P C S D P P Q - - - - G Y L S D D P A H V S T F A N R R G D R K K G V P
 
AT5G47390.1     W T E E E H R M F L L G L Q K L G K G D W R G I S R N Y V T T R T P T Q V A S H A Q K Y F I R Q S N V S R R K R R S S L
gm040883_Glyma1    W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T Q V A S H A Q K Y F I R Q S H A T R R K R R S S L
gm038242_Glyma1    W T E E E H R L F L I G L Q K L G K G D W R G I A R N F V V S R T P T Q V A S H A Q K Y F I R Q S H A T R R K R R S S L
 
AT5G47390.1     F D M V P D E V G D I P M D L Q E P E E D N I P V E T E M Q G A D S I H Q T L A P S S L H A P S I L E I E E C E S M D S
gm040883_Glyma1    F D M V P D M S S D Q P - - - S V P E E - - - - - - - - - - - - - - - - Q V L L P P P E N S - - - - - - Q P C N G - - -
gm038242_Glyma1    F D M V P D M S S D Q P - - - S V P E E - - - - - - - - - - - - - - - - Q V L L P P S Q N S - - - - - - Q P C N G - - -
 
AT5G47390.1     T N S T T G E P T A T A A A A S S S S R L E E T T Q L Q S Q L Q P Q P Q L P G S F - - - P I L Y P T Y F S P Y Y P F P F
gm040883_Glyma1    - - - - K S Q P S L N L S L K S E F E P M E T T S Q E N V Q Q T N E P M M - G S N R L T P M A P H G C F P A Y L P V P F
gm038242_Glyma1    - - - - K S Q P S L N L S L K S E F E P M E T T S Q E N A Q Q T N E T M M - G S I G L T P M A P H G F F P A Y L P V P F
 
AT5G47390.1     P I W P A G Y V P - - E P P K K E E T - - H E I L R P T A V H S K A P I N V D E L L G M S K L S L A E S N K H G E S D Q
gm040883_Glyma1    P V W P S T W V H P F E E V K G G E T C H H Q I H K P I P V I P K E P V N V D E L V G M S H L S I G E A Q V R D R E P S
gm038242_Glyma1    P M W P S T V A P P F E E V K G G E T S H H Q I H K P I P V I P K E P V N V D E L V G M S H L S I G E A K V R D R E P S
 
AT5G47390.1     S L S L K L G G G S S S R Q S A F H P N P S S D S S D I K - - - - S V I H A L
gm040883_Glyma1    P L S I K L - L G E P S R Q S A F H A N V P V G S S D L N N G K D N A I Q A V
gm038242_Glyma1    P L S L K L - L G E P S R Q S A F H A N A P V G T S D L N N G K D N A I Q A V
 
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