fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47640.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt016647 not found in 182aa AT4G14540.1 1st_not 0.804979253 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47640.1     MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ
pt016647_POPTR_ MADSDNESGG------HNAVSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ
                *.***.:***      :*. *.**.:********************************:*

AT5G47640.1     ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE
pt016647_POPTR_ ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYREMEGE
                *********:*********:*********************:******:***::**:***

AT5G47640.1     RTGLGRPQTGGEVGEHQRDAVGDGGGFYGGG-----GGMQYHQHHQFLHQQNHMYGATGG
pt016647_POPTR_ KSSMGRPAGEKDGGGGANSTGGGGGGFNGGGGQGMYGGMMMMGH----HHQGHVYGA---
                ::.:***    : *   ..: *.**** ***     ***    *    *:*.*:***   

AT5G47640.1     GSDSGGGAASGRTRT----
pt016647_POPTR_ ----GGFHHQGNSRANDPP
                    **   .*.:*:
BoxShade v3.31 C (beta, 970507) Output
AT5G47640.1     M G D S D R D S G G G Q N G N N Q N G Q S S L S P R E Q D R F L P I A N V S R I M K K A L P A N A K I S K D A K E T M Q
pt016647_POPTR_    M A D S D N E S G G - - - - - - H N A V S E L S A K E Q D R F L P I A N V S R I M K K A L P A N A K I S K D A K E T V Q
 
AT5G47640.1     E C V S E F I S F V T G E A S D K C Q K E K R K T I N G D D L L W A M T T L G F E D Y V E P L K V Y L Q R F R E I E G E
pt016647_POPTR_    E C V S E F I S F I T G E A S D K C Q R E K R K T I N G D D L L W A M T T L G F E E Y V E P L K I Y L Q K Y R E M E G E
 
AT5G47640.1     R T G L G R P Q T G G E V G E H Q R D A V G D G G G F Y G G G - - - - - G G M Q Y H Q H H Q F L H Q Q N H M Y G A T G G
pt016647_POPTR_    K S S M G R P A G E K D G G G G A N S T G G G G G G F N G G G G Q G M Y G G M M M M G H - - - - H H Q G H V Y G A - - -
 
AT5G47640.1     G S D S G G G A A S G R T R T - - - -
pt016647_POPTR_    - - - - G G F H H Q G N S R A N D P P
 
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