fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47640.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm048942 not found in 184aa AT5G47640.1 not_1st 0.800829875 II
Gm023182 not found in 191aa AT5G47640.1 not_1st 0.800829875 II
Gm006581 not found in 197aa AT5G47640.1 not_1st 0.423236514 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT5G47640.1     MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ
gm006581_Glyma0 MADSDNDSGGAHNSGK---GGKVLPRELDRFLPIANVSRIMKKALLANAKILKYAKETVQ
gm023182_Glyma0 MADSDNDSGGAHNGGK---GSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ
gm048942_Glyma1 MADSDNDSGGAHNAGK---GSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQ
                *.***.****.:*..:    ..: *** ***************** ***** * ****:*

AT5G47640.1     ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGF--EDYVEP------LKVYLQ
gm006581_Glyma0 ECVSEFISFIIDEASDKCQREKRKATSSASKKWKERRLRLPSQKLSHPSLPRIKMWGYLP
gm023182_Glyma0 ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGF--EDYVEP------LKGYLQ
gm048942_Glyma1 ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGF--EDYVEP------LKGYLQ
                *********: .*******:****: .. .  *    * :  :.  .*      :  ** 

AT5G47640.1     RF--REIEGERTGLGR-----PQTGGEVGEHQRDAVGDGGGFYGGG----GGMQYHQHHQ
gm006581_Glyma0 RALPHRMPLLTLVLVR---VPP--------------------FGYSW-------------
gm023182_Glyma0 RF--REMEGEKTVAARDKDAPPLTNATNSAYESAN-------YAAAAAVPGGIMMH----
gm048942_Glyma1 RF--REMEGEKTVAARDKDAPPPTNATNSAYESPS-------YAAA---PGGIMMH----
                *   :.:        *     *                    :. .              

AT5G47640.1     FLHQQNHMYGATG------GGSDSGG-----------------GAASGRTRT--------
gm006581_Glyma0 ----KDVCGGGCGFTMAISGGSSHESENNPKENPLMLWLTSGPGCSAFSGLVIEIGPLAF
gm023182_Glyma0 ----QGHVYGSAGFHQ-VAGGAIKGGPAYP-----------GPGSNAGRPR---------
gm048942_Glyma1 ----QGHVYGSAGFHQ-VAGGAIKGGPVYP-----------GPGSNA-------------
                    :.   *. *      **:   .                 *. :
BoxShade v3.31 C (beta, 970507) Output
AT5G47640.1     M G D S D R D S G G G Q N G N N Q N G Q S S L S P R E Q D R F L P I A N V S R I M K K A L P A N A K I S K D A K E T M Q
gm006581_Glyma0    M A D S D N D S G G A H N S G K - - - G G K V L P R E L D R F L P I A N V S R I M K K A L L A N A K I L K Y A K E T V Q
gm023182_Glyma0    M A D S D N D S G G A H N G G K - - - G S E M S P R E Q D R F L P I A N V S R I M K K A L P A N A K I S K D A K E T V Q
gm048942_Glyma1    M A D S D N D S G G A H N A G K - - - G S E M S P R E Q D R F L P I A N V S R I M K K A L P A N A K I S K D A K E T V Q
 
AT5G47640.1     E C V S E F I S F V T G E A S D K C Q K E K R K T I N G D D L L W A M T T L G F - - E D Y V E P - - - - - - L K V Y L Q
gm006581_Glyma0    E C V S E F I S F I I D E A S D K C Q R E K R K A T S S A S K K W K E R R L R L P S Q K L S H P S L P R I K M W G Y L P
gm023182_Glyma0    E C V S E F I S F I T G E A S D K C Q R E K R K T I N G D D L L W A M T T L G F - - E D Y V E P - - - - - - L K G Y L Q
gm048942_Glyma1    E C V S E F I S F I T G E A S D K C Q R E K R K T I N G D D L L W A M T T L G F - - E D Y V E P - - - - - - L K G Y L Q
 
AT5G47640.1     R F - - R E I E G E R T G L G R - - - - - P Q T G G E V G E H Q R D A V G D G G G F Y G G G - - - - G G M Q Y H Q H H Q
gm006581_Glyma0    R A L P H R M P L L T L V L V R - - - V P P - - - - - - - - - - - - - - - - - - - - F G Y S W - - - - - - - - - - - - -
gm023182_Glyma0    R F - - R E M E G E K T V A A R D K D A P P L T N A T N S A Y E S A N - - - - - - - Y A A A A A V P G G I M M H - - - -
gm048942_Glyma1    R F - - R E M E G E K T V A A R D K D A P P P T N A T N S A Y E S P S - - - - - - - Y A A A - - - P G G I M M H - - - -
 
AT5G47640.1     F L H Q Q N H M Y G A T G - - - - - - G G S D S G G - - - - - - - - - - - - - - - - - G A A S G R T R T - - - - - - - -
gm006581_Glyma0    - - - - K D V C G G G C G F T M A I S G G S S H E S E N N P K E N P L M L W L T S G P G C S A F S G L V I E I G P L A F
gm023182_Glyma0    - - - - Q G H V Y G S A G F H Q - V A G G A I K G G P A Y P - - - - - - - - - - - G P G S N A G R P R - - - - - - - - -
gm048942_Glyma1    - - - - Q G H V Y G S A G F H Q - V A G G A I K G G P V Y P - - - - - - - - - - - G P G S N A - - - - - - - - - - - - -
 
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