fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT5G47670.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt006104 not found in 189aa AT5G47670.2 not_not 0.435344827 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT5G47670.1     MERGGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNKTSNGGEEECTVREQD
pt006104_POPTR_ ---------------------MGTASSSTQAQLDGNAPHGRQDDIN------ECTVREQD
                                      * *:.   *: . ..*. .* : .      ********

AT5G47670.1     RFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAE
pt006104_POPTR_ RFMPIANVIRIMRKILPSHAKISDDAKETIQECVSEYISFITSEANERCQREQRKTITAE
                *************:***:*******:****************.*****************

AT5G47670.1     DVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVSMTNGLVVK--RPN-----
pt006104_POPTR_ DVLYAMSKLGFDDYIEPLTIYLHRYRELEGERS--------SMRCEPLVKSTRNNNNNVD
                ***:***************:************.        **    :**  * *     

AT5G47670.1     --GTMTEYGAYGPVPGIHMAQYHYRHQNGFVFSGNEPNSKMSGSSSGASGARVEVFPTQQ
pt006104_POPTR_ QFGAMAGVGAYA--PAFHVSHHHH----GF----------FGGSSHAAALANVEAF--AQ
                  *:*:  ***.  *.:*::::*:    **          :.*** .*: *.**.*   *

AT5G47670.1     HKY
pt006104_POPTR_ HK-
                **
BoxShade v3.31 C (beta, 970507) Output
AT5G47670.1     M E R G G F H G Y R K L S V N N T T P S P P G L A A N F L M A E G S M R P P E F N Q P N K T S N G G E E E C T V R E Q D
pt006104_POPTR_    - - - - - - - - - - - - - - - - - - - - - M G T A S S S T Q A Q L D G N A P H G R Q D D I N - - - - - - E C T V R E Q D
 
AT5G47670.1     R F M P I A N V I R I M R R I L P A H A K I S D D S K E T I Q E C V S E Y I S F I T G E A N E R C Q R E Q R K T I T A E
pt006104_POPTR_    R F M P I A N V I R I M R K I L P S H A K I S D D A K E T I Q E C V S E Y I S F I T S E A N E R C Q R E Q R K T I T A E
 
AT5G47670.1     D V L W A M S K L G F D D Y I E P L T L Y L H R Y R E L E G E R G V S C S A G S V S M T N G L V V K - - R P N - - - - -
pt006104_POPTR_    D V L Y A M S K L G F D D Y I E P L T I Y L H R Y R E L E G E R S - - - - - - - - S M R C E P L V K S T R N N N N N V D
 
AT5G47670.1     - - G T M T E Y G A Y G P V P G I H M A Q Y H Y R H Q N G F V F S G N E P N S K M S G S S S G A S G A R V E V F P T Q Q
pt006104_POPTR_    Q F G A M A G V G A Y A - - P A F H V S H H H H - - - - G F - - - - - - - - - - F G G S S H A A A L A N V E A F - - A Q
 
AT5G47670.1     H K Y
pt006104_POPTR_    H K -
 
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